Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_L24
(862 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M86737-1|AAA58660.1| 709|Homo sapiens high mobility group box p... 236 9e-62
BC091486-1|AAH91486.1| 633|Homo sapiens SSRP1 protein protein. 236 9e-62
BC005116-1|AAH05116.1| 709|Homo sapiens structure specific reco... 236 9e-62
AB209132-1|BAD92369.1| 547|Homo sapiens structure specific reco... 92 3e-18
Z97634-8|CAI95598.1| 771|Homo sapiens transmembrane protein 8 (... 30 9.4
Z97634-7|CAI95597.1| 238|Homo sapiens transmembrane protein 8 (... 30 9.4
BC021557-1|AAH21557.1| 771|Homo sapiens transmembrane protein 8... 30 9.4
BC004276-1|AAH04276.1| 155|Homo sapiens Unknown (protein for IM... 30 9.4
AE006463-7|AAK61227.1| 771|Homo sapiens M83 protein. 30 9.4
AB045292-1|BAB16376.1| 771|Homo sapiens M83 protein protein. 30 9.4
>M86737-1|AAA58660.1| 709|Homo sapiens high mobility group box
protein.
Length = 709
Score = 236 bits (577), Expect = 9e-62
Identities = 110/204 (53%), Positives = 145/204 (71%)
Frame = +1
Query: 238 NSKTGKVEQISANDIELVNFQKFIGSWGLRLSLKNGTLHRYGGFKEGEQEKVAKFFKANY 417
NSKTGKV+ I A ++ +++ GL+L KNG +++Y GF+E E EK++ FFK +Y
Sbjct: 34 NSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHY 93
Query: 418 NKDMLEKELSLKGWNWGTAKFNGAVLSFNVGTNTAFEIPLHYVSQCNTGKNEVTLEFHQN 597
+++EK+L +KGWNWGT KF G +LSF++G FEIPL VSQC TGKNEVTLEFHQN
Sbjct: 94 RLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQN 153
Query: 598 DDTPVSLMEMRFHIPTSEVANDLDAVEAFHQQVMNKASVISVSGDAIAIFRELQCLTPRG 777
DD VSLME+RF++P ++ + +D VEAF Q V++KA VI +GDAI IFRELQCLTPRG
Sbjct: 154 DDAEVSLMEVRFYVPPTQ-EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRG 212
Query: 778 RYDIKVXXTFFXASRXNL*LQDPY 849
RYDI++ TF + PY
Sbjct: 213 RYDIRIYPTFLHLHGKTFDYKIPY 236
Score = 38.7 bits (86), Expect = 0.027
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +3
Query: 144 EFLEYNDVSAEIKGNMVPGRLKMTDQNIIF 233
E LE+NDV E+KG+M GRL+++ Q IIF
Sbjct: 3 ETLEFNDVYQEVKGSMNDGRLRLSRQGIIF 32
Score = 34.7 bits (76), Expect = 0.44
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +2
Query: 815 LHGKTFDYKIPMSTVL 862
LHGKTFDYKIP +TVL
Sbjct: 225 LHGKTFDYKIPYTTVL 240
>BC091486-1|AAH91486.1| 633|Homo sapiens SSRP1 protein protein.
Length = 633
Score = 236 bits (577), Expect = 9e-62
Identities = 110/204 (53%), Positives = 145/204 (71%)
Frame = +1
Query: 238 NSKTGKVEQISANDIELVNFQKFIGSWGLRLSLKNGTLHRYGGFKEGEQEKVAKFFKANY 417
NSKTGKV+ I A ++ +++ GL+L KNG +++Y GF+E E EK++ FFK +Y
Sbjct: 34 NSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHY 93
Query: 418 NKDMLEKELSLKGWNWGTAKFNGAVLSFNVGTNTAFEIPLHYVSQCNTGKNEVTLEFHQN 597
+++EK+L +KGWNWGT KF G +LSF++G FEIPL VSQC TGKNEVTLEFHQN
Sbjct: 94 RLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQN 153
Query: 598 DDTPVSLMEMRFHIPTSEVANDLDAVEAFHQQVMNKASVISVSGDAIAIFRELQCLTPRG 777
DD VSLME+RF++P ++ + +D VEAF Q V++KA VI +GDAI IFRELQCLTPRG
Sbjct: 154 DDAEVSLMEVRFYVPPTQ-EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRG 212
Query: 778 RYDIKVXXTFFXASRXNL*LQDPY 849
RYDI++ TF + PY
Sbjct: 213 RYDIRIYPTFLHLHGKTFDYKIPY 236
Score = 38.7 bits (86), Expect = 0.027
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +3
Query: 144 EFLEYNDVSAEIKGNMVPGRLKMTDQNIIF 233
E LE+NDV E+KG+M GRL+++ Q IIF
Sbjct: 3 ETLEFNDVYQEVKGSMNDGRLRLSRQGIIF 32
Score = 34.7 bits (76), Expect = 0.44
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +2
Query: 815 LHGKTFDYKIPMSTVL 862
LHGKTFDYKIP +TVL
Sbjct: 225 LHGKTFDYKIPYTTVL 240
>BC005116-1|AAH05116.1| 709|Homo sapiens structure specific
recognition protein 1 protein.
Length = 709
Score = 236 bits (577), Expect = 9e-62
Identities = 110/204 (53%), Positives = 145/204 (71%)
Frame = +1
Query: 238 NSKTGKVEQISANDIELVNFQKFIGSWGLRLSLKNGTLHRYGGFKEGEQEKVAKFFKANY 417
NSKTGKV+ I A ++ +++ GL+L KNG +++Y GF+E E EK++ FFK +Y
Sbjct: 34 NSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHY 93
Query: 418 NKDMLEKELSLKGWNWGTAKFNGAVLSFNVGTNTAFEIPLHYVSQCNTGKNEVTLEFHQN 597
+++EK+L +KGWNWGT KF G +LSF++G FEIPL VSQC TGKNEVTLEFHQN
Sbjct: 94 RLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQN 153
Query: 598 DDTPVSLMEMRFHIPTSEVANDLDAVEAFHQQVMNKASVISVSGDAIAIFRELQCLTPRG 777
DD VSLME+RF++P ++ + +D VEAF Q V++KA VI +GDAI IFRELQCLTPRG
Sbjct: 154 DDAEVSLMEVRFYVPPTQ-EDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRG 212
Query: 778 RYDIKVXXTFFXASRXNL*LQDPY 849
RYDI++ TF + PY
Sbjct: 213 RYDIRIYPTFLHLHGKTFDYKIPY 236
Score = 38.7 bits (86), Expect = 0.027
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +3
Query: 144 EFLEYNDVSAEIKGNMVPGRLKMTDQNIIF 233
E LE+NDV E+KG+M GRL+++ Q IIF
Sbjct: 3 ETLEFNDVYQEVKGSMNDGRLRLSRQGIIF 32
Score = 34.7 bits (76), Expect = 0.44
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +2
Query: 815 LHGKTFDYKIPMSTVL 862
LHGKTFDYKIP +TVL
Sbjct: 225 LHGKTFDYKIPYTTVL 240
>AB209132-1|BAD92369.1| 547|Homo sapiens structure specific
recognition protein 1 variant protein.
Length = 547
Score = 91.9 bits (218), Expect = 3e-18
Identities = 39/83 (46%), Positives = 58/83 (69%)
Frame = +1
Query: 238 NSKTGKVEQISANDIELVNFQKFIGSWGLRLSLKNGTLHRYGGFKEGEQEKVAKFFKANY 417
NSKTGKV+ I A ++ +++ GL+L KNG +++Y GF+E E EK++ FFK +Y
Sbjct: 238 NSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHY 297
Query: 418 NKDMLEKELSLKGWNWGTAKFNG 486
+++EK+L +KGWNWGT KF G
Sbjct: 298 RLELMEKDLCVKGWNWGTVKFGG 320
Score = 88.2 bits (209), Expect = 3e-17
Identities = 41/72 (56%), Positives = 52/72 (72%)
Frame = +1
Query: 463 WGTAKFNGAVLSFNVGTNTAFEIPLHYVSQCNTGKNEVTLEFHQNDDTPVSLMEMRFHIP 642
W + G +LSF++G FEIPL VSQC TGKNEVTLEFHQNDD VSLME+RF++P
Sbjct: 408 WISPFLTGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVP 467
Query: 643 TSEVANDLDAVE 678
++ + +D VE
Sbjct: 468 PTQ-EDGVDPVE 478
Score = 38.7 bits (86), Expect = 0.027
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +3
Query: 144 EFLEYNDVSAEIKGNMVPGRLKMTDQNIIF 233
E LE+NDV E+KG+M GRL+++ Q IIF
Sbjct: 207 ETLEFNDVYQEVKGSMNDGRLRLSRQGIIF 236
>Z97634-8|CAI95598.1| 771|Homo sapiens transmembrane protein 8
(five membrane-spanning domains) protein.
Length = 771
Score = 30.3 bits (65), Expect = 9.4
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -1
Query: 712 HSLCSLLVGGM--LQLHPNHWPLHWWECGSAFPSMIQVCHHSDE 587
HS+ +L+ G L L P P W C FP Q+C + E
Sbjct: 722 HSIWHILLAGSAALLLPPPDQPAEPWACSQKFPCHYQICKNDRE 765
>Z97634-7|CAI95597.1| 238|Homo sapiens transmembrane protein 8
(five membrane-spanning domains) protein.
Length = 238
Score = 30.3 bits (65), Expect = 9.4
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -1
Query: 712 HSLCSLLVGGM--LQLHPNHWPLHWWECGSAFPSMIQVCHHSDE 587
HS+ +L+ G L L P P W C FP Q+C + E
Sbjct: 189 HSIWHILLAGSAALLLPPPDQPAEPWACSQKFPCHYQICKNDRE 232
>BC021557-1|AAH21557.1| 771|Homo sapiens transmembrane protein 8
(five membrane-spanning domains) protein.
Length = 771
Score = 30.3 bits (65), Expect = 9.4
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -1
Query: 712 HSLCSLLVGGM--LQLHPNHWPLHWWECGSAFPSMIQVCHHSDE 587
HS+ +L+ G L L P P W C FP Q+C + E
Sbjct: 722 HSIWHILLAGSAALLLPPPDQPAEPWACSQKFPCHYQICKNDRE 765
>BC004276-1|AAH04276.1| 155|Homo sapiens Unknown (protein for
IMAGE:3615480) protein.
Length = 155
Score = 30.3 bits (65), Expect = 9.4
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -1
Query: 712 HSLCSLLVGGM--LQLHPNHWPLHWWECGSAFPSMIQVCHHSDE 587
HS+ +L+ G L L P P W C FP Q+C + E
Sbjct: 106 HSIWHILLAGSAALLLPPPDQPAEPWACSQKFPCHYQICKNDRE 149
>AE006463-7|AAK61227.1| 771|Homo sapiens M83 protein.
Length = 771
Score = 30.3 bits (65), Expect = 9.4
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -1
Query: 712 HSLCSLLVGGM--LQLHPNHWPLHWWECGSAFPSMIQVCHHSDE 587
HS+ +L+ G L L P P W C FP Q+C + E
Sbjct: 722 HSIWHILLAGSAALLLPPPDQPAEPWACSQKFPCHYQICKNDRE 765
>AB045292-1|BAB16376.1| 771|Homo sapiens M83 protein protein.
Length = 771
Score = 30.3 bits (65), Expect = 9.4
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -1
Query: 712 HSLCSLLVGGM--LQLHPNHWPLHWWECGSAFPSMIQVCHHSDE 587
HS+ +L+ G L L P P W C FP Q+C + E
Sbjct: 722 HSIWHILLAGSAALLLPPPDQPAEPWACSQKFPCHYQICKNDRE 765
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,700,008
Number of Sequences: 237096
Number of extensions: 2432184
Number of successful extensions: 8618
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8615
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10984231046
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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