Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_L24
(862 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X68408-1|CAA48471.1| 723|Drosophila melanogaster SSRP1 protein. 281 7e-76
BT004831-1|AAO45187.1| 723|Drosophila melanogaster SD06504p pro... 281 7e-76
AE013599-3689|AAF47064.1| 723|Drosophila melanogaster CG4817-PA... 281 7e-76
L08825-1|AAA28914.1| 723|Drosophila melanogaster single-strande... 278 6e-75
>X68408-1|CAA48471.1| 723|Drosophila melanogaster SSRP1 protein.
Length = 723
Score = 281 bits (690), Expect = 7e-76
Identities = 127/191 (66%), Positives = 157/191 (82%)
Frame = +1
Query: 238 NSKTGKVEQISANDIELVNFQKFIGSWGLRLSLKNGTLHRYGGFKEGEQEKVAKFFKANY 417
N+KTGKVEQISA DI+L+N QKF+G+WGLR+ K G LHR+ GF++ E EK+ KF KA Y
Sbjct: 34 NTKTGKVEQISAEDIDLINSQKFVGTWGLRVFTKGGVLHRFTGFRDSEHEKLGKFIKAAY 93
Query: 418 NKDMLEKELSLKGWNWGTAKFNGAVLSFNVGTNTAFEIPLHYVSQCNTGKNEVTLEFHQN 597
+++M+EKE+ +KGWNWGTA+F G+VLSF+ + T FE+PL +VSQC TGKNEVTLEFHQN
Sbjct: 94 SQEMVEKEMCVKGWNWGTARFMGSVLSFDKESKTIFEVPLSHVSQCVTGKNEVTLEFHQN 153
Query: 598 DDTPVSLMEMRFHIPTSEVANDLDAVEAFHQQVMNKASVISVSGDAIAIFRELQCLTPRG 777
DD PV L+EMRFHIP E A + D V+ FHQ VM+KASVIS SG++IAIFRE+Q LTPRG
Sbjct: 154 DDAPVGLLEMRFHIPAVESAEE-DPVDKFHQNVMSKASVISASGESIAIFREIQILTPRG 212
Query: 778 RYDIKVXXTFF 810
RYDIK+ TFF
Sbjct: 213 RYDIKIFSTFF 223
Score = 46.8 bits (106), Expect = 4e-05
Identities = 19/28 (67%), Positives = 25/28 (89%)
Frame = +3
Query: 150 LEYNDVSAEIKGNMVPGRLKMTDQNIIF 233
LEYND++AE++G + GRLKMT+QNIIF
Sbjct: 5 LEYNDINAEVRGVLCSGRLKMTEQNIIF 32
Score = 37.1 bits (82), Expect = 0.031
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +2
Query: 809 FXLHGKTFDYKIPMSTVL 862
F LHGKTFDYKIPM +VL
Sbjct: 223 FQLHGKTFDYKIPMDSVL 240
>BT004831-1|AAO45187.1| 723|Drosophila melanogaster SD06504p
protein.
Length = 723
Score = 281 bits (690), Expect = 7e-76
Identities = 127/191 (66%), Positives = 157/191 (82%)
Frame = +1
Query: 238 NSKTGKVEQISANDIELVNFQKFIGSWGLRLSLKNGTLHRYGGFKEGEQEKVAKFFKANY 417
N+KTGKVEQISA DI+L+N QKF+G+WGLR+ K G LHR+ GF++ E EK+ KF KA Y
Sbjct: 34 NTKTGKVEQISAEDIDLINSQKFVGTWGLRVFTKGGVLHRFTGFRDSEHEKLGKFIKAAY 93
Query: 418 NKDMLEKELSLKGWNWGTAKFNGAVLSFNVGTNTAFEIPLHYVSQCNTGKNEVTLEFHQN 597
+++M+EKE+ +KGWNWGTA+F G+VLSF+ + T FE+PL +VSQC TGKNEVTLEFHQN
Sbjct: 94 SQEMVEKEMCVKGWNWGTARFMGSVLSFDKESKTIFEVPLSHVSQCVTGKNEVTLEFHQN 153
Query: 598 DDTPVSLMEMRFHIPTSEVANDLDAVEAFHQQVMNKASVISVSGDAIAIFRELQCLTPRG 777
DD PV L+EMRFHIP E A + D V+ FHQ VM+KASVIS SG++IAIFRE+Q LTPRG
Sbjct: 154 DDAPVGLLEMRFHIPAVESAEE-DPVDKFHQNVMSKASVISASGESIAIFREIQILTPRG 212
Query: 778 RYDIKVXXTFF 810
RYDIK+ TFF
Sbjct: 213 RYDIKIFSTFF 223
Score = 46.8 bits (106), Expect = 4e-05
Identities = 19/28 (67%), Positives = 25/28 (89%)
Frame = +3
Query: 150 LEYNDVSAEIKGNMVPGRLKMTDQNIIF 233
LEYND++AE++G + GRLKMT+QNIIF
Sbjct: 5 LEYNDINAEVRGVLCSGRLKMTEQNIIF 32
Score = 37.1 bits (82), Expect = 0.031
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +2
Query: 809 FXLHGKTFDYKIPMSTVL 862
F LHGKTFDYKIPM +VL
Sbjct: 223 FQLHGKTFDYKIPMDSVL 240
>AE013599-3689|AAF47064.1| 723|Drosophila melanogaster CG4817-PA
protein.
Length = 723
Score = 281 bits (690), Expect = 7e-76
Identities = 127/191 (66%), Positives = 157/191 (82%)
Frame = +1
Query: 238 NSKTGKVEQISANDIELVNFQKFIGSWGLRLSLKNGTLHRYGGFKEGEQEKVAKFFKANY 417
N+KTGKVEQISA DI+L+N QKF+G+WGLR+ K G LHR+ GF++ E EK+ KF KA Y
Sbjct: 34 NTKTGKVEQISAEDIDLINSQKFVGTWGLRVFTKGGVLHRFTGFRDSEHEKLGKFIKAAY 93
Query: 418 NKDMLEKELSLKGWNWGTAKFNGAVLSFNVGTNTAFEIPLHYVSQCNTGKNEVTLEFHQN 597
+++M+EKE+ +KGWNWGTA+F G+VLSF+ + T FE+PL +VSQC TGKNEVTLEFHQN
Sbjct: 94 SQEMVEKEMCVKGWNWGTARFMGSVLSFDKESKTIFEVPLSHVSQCVTGKNEVTLEFHQN 153
Query: 598 DDTPVSLMEMRFHIPTSEVANDLDAVEAFHQQVMNKASVISVSGDAIAIFRELQCLTPRG 777
DD PV L+EMRFHIP E A + D V+ FHQ VM+KASVIS SG++IAIFRE+Q LTPRG
Sbjct: 154 DDAPVGLLEMRFHIPAVESAEE-DPVDKFHQNVMSKASVISASGESIAIFREIQILTPRG 212
Query: 778 RYDIKVXXTFF 810
RYDIK+ TFF
Sbjct: 213 RYDIKIFSTFF 223
Score = 46.8 bits (106), Expect = 4e-05
Identities = 19/28 (67%), Positives = 25/28 (89%)
Frame = +3
Query: 150 LEYNDVSAEIKGNMVPGRLKMTDQNIIF 233
LEYND++AE++G + GRLKMT+QNIIF
Sbjct: 5 LEYNDINAEVRGVLCSGRLKMTEQNIIF 32
Score = 37.1 bits (82), Expect = 0.031
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +2
Query: 809 FXLHGKTFDYKIPMSTVL 862
F LHGKTFDYKIPM +VL
Sbjct: 223 FQLHGKTFDYKIPMDSVL 240
>L08825-1|AAA28914.1| 723|Drosophila melanogaster single-stranded
recognition proteinprotein.
Length = 723
Score = 278 bits (682), Expect = 6e-75
Identities = 126/191 (65%), Positives = 156/191 (81%)
Frame = +1
Query: 238 NSKTGKVEQISANDIELVNFQKFIGSWGLRLSLKNGTLHRYGGFKEGEQEKVAKFFKANY 417
N+KTGKVEQISA DI+L+N QKF+G+WGLR+ K G LHR+ GF++ E EK+ KF KA Y
Sbjct: 34 NTKTGKVEQISAEDIDLINSQKFVGTWGLRVFTKGGVLHRFTGFRDSEHEKLGKFIKAAY 93
Query: 418 NKDMLEKELSLKGWNWGTAKFNGAVLSFNVGTNTAFEIPLHYVSQCNTGKNEVTLEFHQN 597
+++M+EKE+ +KGWNWGTA+F G+VLSF+ + T FE+PL +VSQC TGKNEVTLEFHQN
Sbjct: 94 SQEMVEKEMCVKGWNWGTARFMGSVLSFDKESKTIFEVPLSHVSQCVTGKNEVTLEFHQN 153
Query: 598 DDTPVSLMEMRFHIPTSEVANDLDAVEAFHQQVMNKASVISVSGDAIAIFRELQCLTPRG 777
DD PV L+EMRFHIP E A + D V+ FHQ VM+KASVIS SG++IAIFRE+Q LTPR
Sbjct: 154 DDAPVGLLEMRFHIPAVESAEE-DPVDKFHQNVMSKASVISASGESIAIFREIQILTPRR 212
Query: 778 RYDIKVXXTFF 810
RYDIK+ TFF
Sbjct: 213 RYDIKIFSTFF 223
Score = 45.6 bits (103), Expect = 9e-05
Identities = 18/28 (64%), Positives = 25/28 (89%)
Frame = +3
Query: 150 LEYNDVSAEIKGNMVPGRLKMTDQNIIF 233
LEYND++A+++G + GRLKMT+QNIIF
Sbjct: 5 LEYNDINAQVRGVLCSGRLKMTEQNIIF 32
Score = 37.1 bits (82), Expect = 0.031
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +2
Query: 809 FXLHGKTFDYKIPMSTVL 862
F LHGKTFDYKIPM +VL
Sbjct: 223 FQLHGKTFDYKIPMDSVL 240
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,019,148
Number of Sequences: 53049
Number of extensions: 743279
Number of successful extensions: 1526
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1522
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4147514904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -