Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_L24
         (862 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4 p...   158   4e-39
AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3...   149   3e-36
Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical pr...    30   2.4  
Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical p...    30   2.4  
AL032647-7|CAA21691.2|  360|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z68748-8|CAL36498.1|  583|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z68748-4|CAD27622.1|  617|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z68748-3|CAA92953.2|  615|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U51995-8|AAA96076.1|  331|Caenorhabditis elegans Dystroglycan pr...    29   4.3  
AF040653-3|ABS83855.1|  390|Caenorhabditis elegans Hypothetical ...    28   9.8  

>U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4
           protein.
          Length = 697

 Score =  158 bits (384), Expect = 4e-39
 Identities = 78/188 (41%), Positives = 111/188 (59%), Gaps = 1/188 (0%)
 Frame = +1

Query: 244 KTGKVEQISANDIELVNFQKFIGSWGLRLSLKNGTLHRYGGFKEGEQEKVAKFFKANYNK 423
           K GK   ++ +DI+ + +QK     GLR+ L +G  HR+GGFK+ + EK+  F  +N+++
Sbjct: 35  KGGKSVNVTGSDIDKLKWQKLGNKPGLRVGLNDGGAHRFGGFKDTDLEKIQSFTSSNWSQ 94

Query: 424 DMLEKELSLKGWNWGTAKFNGAVLSFNVGTNTAFEIPLHYVSQCNTGKNEVTLEFHQNDD 603
            + +  L +KGWN+G A+  G  + F+      FEIP   VS     KNE  LEFHQNDD
Sbjct: 95  SIDQSNLFIKGWNYGQAEVKGKTVEFSWEDKPIFEIPCTNVSNVIANKNEAVLEFHQNDD 154

Query: 604 TPVSLMEMRFHIPTS-EVANDLDAVEAFHQQVMNKASVISVSGDAIAIFRELQCLTPRGR 780
           + V LMEMRFH+P   E   D D VE F + V+  A + + +   I +  ++ C TPRGR
Sbjct: 155 SKVQLMEMRFHMPIDLENEEDADKVEEFKKAVLAYAGLEAETEQPICLLTDILCTTPRGR 214

Query: 781 YDIKVXXT 804
           YDIKV  T
Sbjct: 215 YDIKVYPT 222



 Score = 31.5 bits (68), Expect = 0.80
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 806 SFXLHGKTFDYKIPMSTV 859
           S  LHGKT+DYKIP+ ++
Sbjct: 223 SIALHGKTYDYKIPIKSI 240


>AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3
           protein.
          Length = 689

 Score =  149 bits (360), Expect = 3e-36
 Identities = 74/188 (39%), Positives = 106/188 (56%), Gaps = 1/188 (0%)
 Frame = +1

Query: 244 KTGKVEQISANDIELVNFQKFIGSWGLRLSLKNGTLHRYGGFKEGEQEKVAKFFKANYNK 423
           K GK   I+  D++ + +QK     GLR+ L +G  HR+GGF + + +K+  F  +N++K
Sbjct: 35  KGGKSVYITGTDVDKLKWQKLGNKPGLRVGLSDGGAHRFGGFLDDDLQKIQSFTSSNWSK 94

Query: 424 DMLEKELSLKGWNWGTAKFNGAVLSFNVGTNTAFEIPLHYVSQCNTGKNEVTLEFHQNDD 603
            + +  L + GWN+G A   G  + F+      FEIP   VS     KNE  LEFHQN+ 
Sbjct: 95  SINQSNLFINGWNYGQADVKGKNIEFSWENEPIFEIPCTNVSNVIANKNEAILEFHQNEQ 154

Query: 604 TPVSLMEMRFHIPTS-EVANDLDAVEAFHQQVMNKASVISVSGDAIAIFRELQCLTPRGR 780
           + V LMEMRFH+P   E   D D VE F + V+  A + + +   I +  ++ C TPRGR
Sbjct: 155 SKVQLMEMRFHMPVDLENEEDTDKVEEFKKAVLAYAGLEAETEQPICLLTDILCTTPRGR 214

Query: 781 YDIKVXXT 804
           YDIKV  T
Sbjct: 215 YDIKVYPT 222



 Score = 33.1 bits (72), Expect = 0.26
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +2

Query: 806 SFXLHGKTFDYKIPMSTV 859
           S  LHGKT+DYKIP+ T+
Sbjct: 223 SIALHGKTYDYKIPVKTI 240


>Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical protein
            H05L14.2 protein.
          Length = 2162

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = -3

Query: 491  TAPLNLAVP---QFQPFRDNXXXXXXXXXXXLKNFATFSCSPSLKPPYLCKVPFLRDKRK 321
            +APLN+ VP   +F P   N             N A  SCS S  PP    +P L + R+
Sbjct: 1934 SAPLNIPVPTAKEFPPLHRNPQPETVTISIVSSNIA--SCSSSPSPPTSPTLPILSEARR 1991


>Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical
            protein H05L14.2 protein.
          Length = 2162

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = -3

Query: 491  TAPLNLAVP---QFQPFRDNXXXXXXXXXXXLKNFATFSCSPSLKPPYLCKVPFLRDKRK 321
            +APLN+ VP   +F P   N             N A  SCS S  PP    +P L + R+
Sbjct: 1934 SAPLNIPVPTAKEFPPLHRNPQPETVTISIVSSNIA--SCSSSPSPPTSPTLPILSEARR 1991


>AL032647-7|CAA21691.2|  360|Caenorhabditis elegans Hypothetical
           protein Y57A10B.4 protein.
          Length = 360

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 401 NFATFSCSPSLKPPYLCKVPFLRDKRKPHEPMNFWKFTSSMS 276
           + A   CSPS +  ++  +P +R  RKP  P++  KF+  +S
Sbjct: 304 SIALLFCSPSWRDAFIGGIPIIRRFRKP--PVSLRKFSQKVS 343


>Z68748-8|CAL36498.1|  583|Caenorhabditis elegans Hypothetical
           protein F13H10.3c protein.
          Length = 583

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 272 LMTLSW*ISRSSLVRGAYVCLSKMVLCTDTEVLKKVSKRRLQNSS 406
           L+ + W + ++ LV G  + LS   +C  T  +   S +RLQ+ S
Sbjct: 149 LLAMPWALQQAGLVLGIIIMLSMAAICFYTAYIVIESPKRLQDLS 193


>Z68748-4|CAD27622.1|  617|Caenorhabditis elegans Hypothetical
           protein F13H10.3b protein.
          Length = 617

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 272 LMTLSW*ISRSSLVRGAYVCLSKMVLCTDTEVLKKVSKRRLQNSS 406
           L+ + W + ++ LV G  + LS   +C  T  +   S +RLQ+ S
Sbjct: 183 LLAMPWALQQAGLVLGIIIMLSMAAICFYTAYIVIESPKRLQDLS 227


>Z68748-3|CAA92953.2|  615|Caenorhabditis elegans Hypothetical
           protein F13H10.3a protein.
          Length = 615

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 272 LMTLSW*ISRSSLVRGAYVCLSKMVLCTDTEVLKKVSKRRLQNSS 406
           L+ + W + ++ LV G  + LS   +C  T  +   S +RLQ+ S
Sbjct: 181 LLAMPWALQQAGLVLGIIIMLSMAAICFYTAYIVIESPKRLQDLS 225


>U51995-8|AAA96076.1|  331|Caenorhabditis elegans Dystroglycan
           protein 3 protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +2

Query: 86  YANFTLLHRVVKYCQITKHGVFRV*RCFRRNKRKHGTREVKNDRPKHNFQXIVKPAKLNK 265
           Y  +  L R +   Q  K    R+ + +RR    H  + V ND+PK+     + P  LN 
Sbjct: 209 YGCYICLSRQIDRAQ--KRSAGRIHKNYRRVATDHSEKTVSNDKPKNISHIRLLPDILNV 266

Query: 266 YQLMT 280
             +MT
Sbjct: 267 RTVMT 271


>AF040653-3|ABS83855.1|  390|Caenorhabditis elegans Hypothetical
           protein K05F6.4 protein.
          Length = 390

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 587 FIRMMTHLYH*WKCASTFPPVKWPMIWMQLKHS 685
           FI+  T   H  K  +TFPP+ +   W  LK S
Sbjct: 214 FIKFNTETDHIVKLFTTFPPINYFKFWHPLKPS 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,135,286
Number of Sequences: 27780
Number of extensions: 413516
Number of successful extensions: 1033
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)