Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_L18
         (844 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0883 + 21279913-21280235,21281066-21281327,21281998-212821...    33   0.22 
05_06_0098 + 25560158-25560925                                         32   0.66 
04_04_0739 - 27693768-27694305,27694765-27694912,27694987-276951...    32   0.66 
06_01_0350 + 2534422-2535615                                           31   0.87 
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309...    31   1.1  
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729...    29   3.5  
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199...    29   6.1  
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969...    29   6.1  
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414     28   8.1  

>10_08_0883 +
           21279913-21280235,21281066-21281327,21281998-21282199,
           21282289-21282436,21282541-21283084
          Length = 492

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +3

Query: 549 GREADA-AGAGSGRCSCVMFVLAS*-YFNTMRPQKLYIFNMTLAKIVLRFGLDPDRVLRP 722
           GRE+   A A  GR        A+  Y  T R  + Y+    + + + R G D DRVL  
Sbjct: 37  GRESGVVAAAAQGRWPRHRHAYAAMMYMGTPRDYEFYVAVRVMMRSLARIGADADRVLIA 96

Query: 723 SADLP 737
           SAD+P
Sbjct: 97  SADVP 101


>05_06_0098 + 25560158-25560925
          Length = 255

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = -2

Query: 573 HRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSP 394
           HRP P P  +   P L  +P + V   I   P PT F + +      ++++   +  T P
Sbjct: 31  HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPP 90


>04_04_0739 -
           27693768-27694305,27694765-27694912,27694987-27695188,
           27695802-27695864,27695865-27696120,27697811-27697953
          Length = 449

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +3

Query: 621 YFNTMRPQKLYIFNMTLAKIVLRFGLDPDRVLRPSADLPXRXSCRFVRARSXDSVR 788
           Y  T R  + Y+    + + + R G D DRV+  S D+P     R+V+A   D V+
Sbjct: 3   YMGTPRDYEFYVATRVMMRSLGRLGSDADRVVIASVDVPP----RWVQALKDDGVK 54


>06_01_0350 + 2534422-2535615
          Length = 397

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 288 PWNSNAQAEKKTLPGPLGGVFRPLG 214
           PW S+A+ E+K LP PL  +F P G
Sbjct: 42  PWRSSARLERKLLPPPLPWLFLPDG 66


>03_04_0090 +
           17228253-17228403,17229062-17229129,17229238-17230902,
           17231002-17231143,17231648-17232399
          Length = 925

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
 Frame = -2

Query: 594 TNIDQTRH------RPHPLPVQTRHAPVLRANP 514
           T IDQ  H      + H +PVQ  H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356


>12_01_0796 +
           7292523-7292783,7292963-7293018,7295274-7295331,
           7295777-7295843,7296461-7296516,7296638-7296691,
           7296836-7296961
          Length = 225

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 564 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 475
           H L +  RH P L+A P S +    C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136


>06_01_0268 +
           1989069-1989293,1989938-1990020,1990136-1990357,
           1990434-1990621,1990711-1990835,1990988-1991039,
           1991585-1991874,1992229-1992307,1992527-1992657
          Length = 464

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 558 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 445
           +P Q + A  + A+P + V    C LP P+LF  L  L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329


>04_03_0732 +
           19095320-19095827,19095848-19096621,19096863-19096906,
           19097191-19097250
          Length = 461

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 570 RPHPLPVQTRHAPVLRANPYSEVTDP 493
           RP+PL V +RHA VL    +  V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158


>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
          Length = 520

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 472 YIILSTRGSSPWRPAADMGTNRRDISTYIPHLNFQGPQRVSG 347
           + +L+ RG  P +PAA     RRD   ++P  + Q P    G
Sbjct: 28  HAVLAVRGPRPLQPAASASFRRRDRWFHLPLHDPQPPPAAEG 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,634,310
Number of Sequences: 37544
Number of extensions: 548815
Number of successful extensions: 1685
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1685
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)