Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_L18
(844 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006633-6|AAK68378.4| 578|Caenorhabditis elegans Hypothetical ... 30 1.8
Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical pr... 29 3.1
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 29 3.1
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 29 3.1
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 29 3.1
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 29 3.1
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 29 3.1
AF039047-11|AAB94230.1| 354|Caenorhabditis elegans Prion-like-(... 29 5.5
>AC006633-6|AAK68378.4| 578|Caenorhabditis elegans Hypothetical
protein F35B3.7 protein.
Length = 578
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 347 TPPQMRCSSRSEPY-LPSIGFHGTRTLRQKRKLFPDLSAASSGLWVTPS 204
TP +M S RS S + + Q++ + LS++SSG+ VTPS
Sbjct: 371 TPREMNASIRSTASNSSSFPYFSPEQINQQKNVLTTLSSSSSGIHVTPS 419
>Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical
protein R11A8.1 protein.
Length = 552
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = -2
Query: 369 KVRREYPDTAANAVLFA---FRT--ISPFYRIPWNSNAQAEKKTLPGPLGGVFRPLGYPV 205
K+ +E D A N + FR I+PF P+ +N Q + +PGP ++ P YPV
Sbjct: 435 KIEKEIADVAENQIRRIEENFRNPFIAPFAFFPYQNNFQMAPQNVPGP--SLYNP--YPV 490
Query: 204 E 202
+
Sbjct: 491 Q 491
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
C25H3.8 protein.
Length = 2148
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -2
Query: 603 T*RTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTDPI 490
T +++ID T H PHP+ VQ T+ V+ P V+ P+
Sbjct: 904 TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPL 944
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 29.5 bits (63), Expect = 3.1
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -3
Query: 737 RKIRGRPENAVRIQSET*DDFRECHIKYIQFLRPHCIKI--LTR*NEHNARTSTRPGTGR 564
R+ RPE S+ D E + +R + +KI LT NE+ TS++PG R
Sbjct: 518 RRSTTRPERGSSSNSD--DSSSEVEGEEKPEVRNNGLKIPQLTVNNENRGETSSQPGRDR 575
Query: 563 IRFPSKPDT 537
+ P+K DT
Sbjct: 576 LAPPNKTDT 584
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 29.5 bits (63), Expect = 3.1
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -3
Query: 737 RKIRGRPENAVRIQSET*DDFRECHIKYIQFLRPHCIKI--LTR*NEHNARTSTRPGTGR 564
R+ RPE S+ D E + +R + +KI LT NE+ TS++PG R
Sbjct: 487 RRSTTRPERGSSSNSD--DSSSEVEGEEKPEVRNNGLKIPQLTVNNENRGETSSQPGRDR 544
Query: 563 IRFPSKPDT 537
+ P+K DT
Sbjct: 545 LAPPNKTDT 553
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 29.5 bits (63), Expect = 3.1
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -3
Query: 737 RKIRGRPENAVRIQSET*DDFRECHIKYIQFLRPHCIKI--LTR*NEHNARTSTRPGTGR 564
R+ RPE S+ D E + +R + +KI LT NE+ TS++PG R
Sbjct: 518 RRSTTRPERGSSSNSD--DSSSEVEGEEKPEVRNNGLKIPQLTVNNENRGETSSQPGRDR 575
Query: 563 IRFPSKPDT 537
+ P+K DT
Sbjct: 576 LAPPNKTDT 584
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 29.5 bits (63), Expect = 3.1
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -3
Query: 737 RKIRGRPENAVRIQSET*DDFRECHIKYIQFLRPHCIKI--LTR*NEHNARTSTRPGTGR 564
R+ RPE S+ D E + +R + +KI LT NE+ TS++PG R
Sbjct: 487 RRSTTRPERGSSSNSD--DSSSEVEGEEKPEVRNNGLKIPQLTVNNENRGETSSQPGRDR 544
Query: 563 IRFPSKPDT 537
+ P+K DT
Sbjct: 545 LAPPNKTDT 553
>AF039047-11|AAB94230.1| 354|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 51
protein.
Length = 354
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = -2
Query: 588 IDQTRHRPHPLPVQTRHAP--VLRANPYSEVTDPICRLPLPTLFYRLEALHLGD 433
+D + P P P Q H P +R NP P+ + P+ L L A H+GD
Sbjct: 53 VDLESNAPPPAPRQQHHVPPSAVRPNPMPP-QRPVAQQPVRAL-SALHAAHIGD 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,256,299
Number of Sequences: 27780
Number of extensions: 431436
Number of successful extensions: 1242
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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