Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_L17
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.90 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   3.6  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   8.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   8.4  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -1

Query: 391 FNKRLQPLQNFTGQYHYRGGSIANLGILRLCNIHQE 284
           +NK ++P+QN T + H   G    L  ++L N++++
Sbjct: 38  YNKLIRPVQNMTEKVHVNFG----LAFVQLINVNEK 69


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = -3

Query: 341 PRWFHRQPRHLETLQYPPRVL 279
           PR  H+   H+++++Y P ++
Sbjct: 157 PRQSHQSYHHMDSVEYKPEIM 177


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 679 VPGSRSGVQENFQLRW 726
           +PGS S V  N++L W
Sbjct: 556 IPGSNSAVFTNYKLYW 571


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = -1

Query: 406 RVNTFFNKRLQPLQNFTGQYHYRGGSIANLGILRLCNIHQEF 281
           ++ T+F+K    + N     +++GG    L   R C  ++ F
Sbjct: 460 KLYTYFDKCDTLINNAVAVENFKGGMYLRLKARRACMNYERF 501


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = -1

Query: 406 RVNTFFNKRLQPLQNFTGQYHYRGGSIANLGILRLCNIHQEF 281
           ++ T+F+K    + N     +++GG    L   R C  ++ F
Sbjct: 460 KLYTYFDKCDTLINNAVAVENFKGGMYLRLKARRACMNYERF 501


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,038
Number of Sequences: 438
Number of extensions: 4788
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)