Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_L15
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    29   0.66 
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    27   2.7  
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   2.7  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    27   4.6  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   6.1  
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha...    26   8.1  

>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +2

Query: 107 FWYWYITCRFLFFFLICSLYRFIN*NIIL*YTVGYHLTLRII-FRNYISKEKTYVCGLHY 283
           F +WY + R   F L+ S +R  +  +     V Y+L L    FR  I         L Y
Sbjct: 116 FKFWYSSMRATLFALVASFFRIFDVPVFWPILVVYYLVLSFFCFRRQIQHM------LKY 169

Query: 284 REVPNDMQAK 313
           R VP D+  K
Sbjct: 170 RYVPFDIGKK 179


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +3

Query: 663 HFGSSRSTNSAFRYLKHWSPFSSKPSLATKGSTSKLTLXPXP 788
           +FGS+ S   A  + K++SP S K S  T  +TSK  L   P
Sbjct: 618 NFGSNNSLRHAKSFSKYYSP-SHKDSNKTSRNTSKEGLPSSP 658


>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 289

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 405 RTNLKSFQIIQSRFCRIAVEALWFVRNVEFHN 500
           R NL+SFQ I +R C      L FV++++  N
Sbjct: 30  RINLQSFQSISARNCGSDARVLDFVKSIDNDN 61


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 345 YKTCIRPVTTYASVVFAHAARTNLKSFQIIQ 437
           YK  + P T + S VFA     NLK   IIQ
Sbjct: 650 YKDFLTPQTEFHSPVFADVGIKNLKKGDIIQ 680


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 655 KHVISDPPDPLTVLLDTSSTGH 720
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/53 (24%), Positives = 21/53 (39%)
 Frame = -3

Query: 751 FVASDGFDENGDQCLRYLKALLVDREDPK*RVWGDVDCFPFCPQDRECSYRRP 593
           F+   G     D  +  L  +   R     R+   + CFP+  QD++   R P
Sbjct: 56  FILQTGCGSINDHLMELLIMINACRSASARRITAIIPCFPYARQDKKDKSRAP 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,132,460
Number of Sequences: 5004
Number of extensions: 64269
Number of successful extensions: 185
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)