Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_L15
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1417 + 33421094-33421516,33421599-33421678,33421769-334219...    31   1.6  
10_08_0527 - 18555231-18555882,18556334-18556463,18557073-18557175     29   6.5  
09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672...    29   6.5  
10_02_0096 - 5248369-5248479,5248562-5248604,5249093-5249178,525...    28   8.5  
08_01_1081 + 11058119-11059756                                         28   8.5  
02_01_0290 - 1944550-1944958,1945235-1945335,1945459-1945719           28   8.5  

>04_04_1417 +
           33421094-33421516,33421599-33421678,33421769-33421904,
           33422043-33422195,33422401-33422489,33423004-33423066,
           33424401-33424485,33425172-33425378
          Length = 411

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = +3

Query: 324 LRNKVTLYKTCIRPVT----TYASVVFAHAARTNLKSFQIIQSRFCRIAVEALWFVRNVE 491
           LR  + +   C+RP      T   V+ +  + T    F I++  F  I+ E  WF  +++
Sbjct: 241 LRRLMFVASLCVRPAAAWRPTMTQVLHSSTSTTRNGPFIIVKGFFADISSEMAWFNSSIK 300

Query: 492 FHNDL 506
            +ND+
Sbjct: 301 PYNDM 305


>10_08_0527 - 18555231-18555882,18556334-18556463,18557073-18557175
          Length = 294

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 244 IISKNDSQSEMIANSIS*YYVSVNEPVQTTDQKEKEEPASDVPI 113
           + S+  + +   A  ++ Y  S++ P  T D  E+EEP + VPI
Sbjct: 152 VYSEGSTAAAAAAGELAPY--SISSPAATADAAEEEEPIAAVPI 193


>09_06_0351 +
           22466160-22466217,22466514-22467052,22467186-22467293,
           22467391-22467546,22467916-22468131,22468639-22468776,
           22468880-22468981,22469089-22469146,22469346-22469408,
           22469543-22469640
          Length = 511

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +1

Query: 499 TTWTLXSISKYLQSASMCHFAKAARHENPRIVAVGNYIPDPADRMESSRRRPK-HVISDP 675
           T  T+  +S Y +S SM  F  +AR   P + +  NY+          RRR +  + SDP
Sbjct: 46  TRTTIFQVSNYSRSTSMERFQLSARFHQPVVDSSTNYLTRWFYNANLKRRRIECFLTSDP 105


>10_02_0096 -
           5248369-5248479,5248562-5248604,5249093-5249178,
           5250089-5250153,5252539-5252747,5253077-5253188,
           5253271-5253322,5254593-5254685,5254997-5255146,
           5255223-5255327,5255858-5255891,5256145-5256281,
           5257691-5257819,5257899-5257977,5258081-5258156,
           5258981-5259070,5259181-5259259,5259397-5259431,
           5260722-5260811,5260913-5261027
          Length = 629

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 666 FGSSRSTNSAFRYLKHWSPFSSKPSL 743
           +GS    +S+ + +  WSPFSSK  L
Sbjct: 203 YGSQGDWDSSLKIILEWSPFSSKEEL 228


>08_01_1081 + 11058119-11059756
          Length = 545

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 675 RIRNDVFGATSTAFHSVRRIGNVVTDGHDARVLVSCRFGEV 553
           R R D  GAT+  +   + +     D +  R+L+SC+ GEV
Sbjct: 238 RERLDALGATAPRYVCTKSLKRSDVDLNQNRLLISCKQGEV 278


>02_01_0290 - 1944550-1944958,1945235-1945335,1945459-1945719
          Length = 256

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 640 CFPFCPQDRECSYRRPRCEGSRVVPLWRS 554
           C+PFCP D +  +    C G  V  +W S
Sbjct: 132 CYPFCPIDEDVEHLFLSCSG--VAAIWHS 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,846,887
Number of Sequences: 37544
Number of extensions: 413733
Number of successful extensions: 1040
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)