Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_L12
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce...    28   1.4  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    27   3.3  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.4  

>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 456

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -1

Query: 121 YNCISRSVCLDFVHFNVDCWCNFN---VRAWYDRM 26
           +NC   S   DF  FN+  WC ++   V  +YDR+
Sbjct: 209 FNCGDESERADFYAFNMYEWCGYSSMTVSGYYDRI 243


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 464 QKAGKTLY*DHQSSYNRTKSKHSTLPKELTG-NAQEDNFPKTRQRRS 601
           +K GK+     Q+  N   SK +T+P  +TG   + DN P  ++RR+
Sbjct: 460 EKTGKSN--SQQAPSNHVLSKSNTVPNLVTGFPTRSDNPPNEKRRRT 504


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 190 FLGVYLIISKLFWTFWSLYGH 252
           F+G +L+   +FW  W+ Y H
Sbjct: 420 FIGCFLLPISMFWFAWTCYPH 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,183,280
Number of Sequences: 5004
Number of extensions: 62808
Number of successful extensions: 244
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)