Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_L12
         (844 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66617-1|AAC50695.1|  435|Homo sapiens SWI/SNF complex 60 KDa su...    32   2.3  
AB040942-1|BAA96033.1| 1326|Homo sapiens KIAA1509 protein protein.     32   2.3  
BC009368-1|AAH09368.3|  476|Homo sapiens SWI/SNF related, matrix...    31   6.9  
AF109733-1|AAD23390.1|  453|Homo sapiens SWI/SNF-related, matrix...    31   6.9  

>U66617-1|AAC50695.1|  435|Homo sapiens SWI/SNF complex 60 KDa
           subunit protein.
          Length = 435

 Score = 32.3 bits (70), Expect = 2.3
 Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
 Frame = +3

Query: 525 SIQRYLKN--LQETHKRIIFQKRDSVEVEYIFTTEK-KSSLQRQRFNSLPVSEVPELLKN 695
           ++ +Y+K   LQ+ H+R  F   D   ++ IF T++ K S   QR ++L +   P ++ N
Sbjct: 279 ALWQYIKTHKLQDPHERE-FVICDKY-LQQIFETQRMKFSEIPQRLHALLMPPEPIII-N 335

Query: 696 EFIAVE-NARQVHICTDCDVEIELTMKSHSWNLCRSTS 806
             I+V+ N ++   C D DVE++ T+K+   +   ST+
Sbjct: 336 HVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTA 373


>AB040942-1|BAA96033.1| 1326|Homo sapiens KIAA1509 protein protein.
          Length = 1326

 Score = 32.3 bits (70), Expect = 2.3
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +3

Query: 543 KNLQETHKRIIFQKRDSVEVEYIFTTEKKSSLQRQRFNSLPVSE 674
           K L E H  ++ +K +  E E + TTE+++  Q QR N+L + E
Sbjct: 505 KELGERHGDMLKRKAELEEREKVLTTEREALQQEQRTNALAMGE 548


>BC009368-1|AAH09368.3|  476|Homo sapiens SWI/SNF related, matrix
           associated, actin dependent regulator of chromatin, sub
           protein.
          Length = 476

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 29/98 (29%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
 Frame = +3

Query: 525 SIQRYLKN--LQETHKRIIFQKRDSVEVEYIFTTEK-KSSLQRQRFNSLPVSEVPELLKN 695
           ++ +Y+K   LQ+ H+R  F   D   ++ IF +++ K S   QR ++L +   P ++ N
Sbjct: 279 ALWQYIKTHKLQDPHERE-FVICDKY-LQQIFESQRMKFSEIPQRLHALLMPPEPIII-N 335

Query: 696 EFIAVE-NARQVHICTDCDVEIELTMKSHSWNLCRSTS 806
             I+V+ N ++   C D DVE++ T+K+   +   ST+
Sbjct: 336 HVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTA 373


>AF109733-1|AAD23390.1|  453|Homo sapiens SWI/SNF-related,
           matrix-associated, actin-dependent regulator of
           chromatin D1 protein.
          Length = 453

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 29/98 (29%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
 Frame = +3

Query: 525 SIQRYLKN--LQETHKRIIFQKRDSVEVEYIFTTEK-KSSLQRQRFNSLPVSEVPELLKN 695
           ++ +Y+K   LQ+ H+R  F   D   ++ IF +++ K S   QR ++L +   P ++ N
Sbjct: 256 ALWQYIKTHKLQDPHERE-FVICDKY-LQQIFESQRMKFSEIPQRLHALLMPPEPIII-N 312

Query: 696 EFIAVE-NARQVHICTDCDVEIELTMKSHSWNLCRSTS 806
             I+V+ N ++   C D DVE++ T+K+   +   ST+
Sbjct: 313 HVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTA 350


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,304,633
Number of Sequences: 237096
Number of extensions: 1947957
Number of successful extensions: 5012
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5012
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10649685938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)