Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_L11
(850 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 120 3e-28
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 51 2e-07
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 45 1e-05
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 41 2e-04
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 39 0.001
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 29 0.63
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra... 28 1.5
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M... 28 1.9
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 28 1.9
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c... 27 2.5
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.4
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 27 4.4
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 5.9
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 26 5.9
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 26 7.8
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 7.8
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |... 26 7.8
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 120 bits (289), Expect = 3e-28
Identities = 66/205 (32%), Positives = 112/205 (54%), Gaps = 5/205 (2%)
Frame = +3
Query: 150 KNFFVDFCQTDDEGKKYFKYAEQLTKVAHREQIAFEVVLDDLHEMNEDLTEA---VKQNT 320
+N + DE KY + L K+++RE V L+DL+E + T+ ++ N
Sbjct: 37 QNQDISMSDAGDEPFLKSKYMDILQKISNRESNVINVDLNDLYEFDPSDTQLLHNIESNA 96
Query: 321 RRYTNMVSDVVYEMLPDYKFKEVVAKDSLDVYIEHRIMLEARNHRIPGEMRDPRNR-YPP 497
+R+ + S ++P + + LDV ++ R+ RN I DP ++ +PP
Sbjct: 97 KRFVELFSQCADALMPPPTVEINYRNEVLDVIMQQRVQ---RNENI-----DPEHKGFPP 148
Query: 498 ELIRRFEVYFKDLSTSKS-VPIREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSAC 674
EL R +++YF+ ++ +K +R+++ E++G L+TVRGIVTR +DVKP L V Y+C C
Sbjct: 149 ELTRGYDLYFRPVTRNKKPFSVRDLRGENLGSLLTVRGIVTRTSDVKPSLTVNAYTCDRC 208
Query: 675 GAETYQPVRALQFTPPPACTADDCR 749
G E +Q +R F P C +D+C+
Sbjct: 209 GYEVFQEIRQKTFLPMSECPSDECK 233
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 50.8 bits (116), Expect = 2e-07
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = +3
Query: 558 IREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSACGAETYQPVRALQFTPPPACTA 737
IR+++ + IG+L T+ G VTR ++V+P L T+ C C +A ++T P C
Sbjct: 198 IRDLRTDRIGRLTTITGTVTRTSEVRPELAQGTFICEECHTVVSNVEQAFRYTEPTQCPN 257
Query: 738 DDC 746
+ C
Sbjct: 258 ELC 260
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 45.2 bits (102), Expect = 1e-05
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Frame = +3
Query: 468 MRDPRNRYPPELIRR---FEVY-FKDLSTSKSVPIREVKAEHIGKLVTVRGIVTRCTDVK 635
M D PPE + ++Y + + K + +R++ I KL++++G+V RCT V
Sbjct: 257 MLDLLGTNPPEDVLNDIELKIYKIRPFNLEKCINMRDLNPGDIDKLISIKGLVLRCTPVI 316
Query: 636 PLLVVATYSCSACGAETYQPVRALQFTPPPACTADDCRLT 755
P + A + CS CG + + P C + C T
Sbjct: 317 PDMKQAFFRCSVCGHCVTVEIDRGRIAEPIKCPREVCGAT 356
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +3
Query: 513 FEVYFKDLSTSKSVPIREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSA 671
F V F+ V R ++A H+ K++++ GIVTRC+ V+P ++ + + C A
Sbjct: 102 FYVGFRGSFGDHHVNPRTLRAMHLNKMISLEGIVTRCSFVRPKVIKSVHYCEA 154
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 38.7 bits (86), Expect = 0.001
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +3
Query: 558 IREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSACGA 680
+R+++ H+ LV V G+VTR T + P L ++C+ CGA
Sbjct: 299 LRDLRQSHLNCLVRVSGVVTRRTGLFPQLKYIRFTCTKCGA 339
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 29.5 bits (63), Expect = 0.63
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 552 VPIREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSACGA 680
+PIR + A HI KLV V GI+ + + C C A
Sbjct: 130 LPIRNLTASHISKLVRVPGIIIGASTLSCRATALHLVCRNCRA 172
>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 369
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = -1
Query: 223 VSCSAYLKYFFPSSSV*QKSTKKFLKDSLSAV 128
V+ LK+ F S S Q ST+KFL ++LSAV
Sbjct: 291 VTYDTLLKHPFGSLSDAQSSTEKFLSNTLSAV 322
>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 467 FSRNPVVSGFQHNSVLNVYIQGILCYYLFEFVIRQ--HFINHV 345
FS +P V + +Y+ + CYY+F+ Q HF N +
Sbjct: 298 FSHDPSVYNWSTQYTTGIYVLLLCCYYIFDTCNGQKNHFRNQI 340
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 27.9 bits (59), Expect = 1.9
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +3
Query: 210 AEQLTKVAHREQIAFEVVLDDLHEMNEDLTEAVKQNTRRYTNMVSDVVYEMLPDYKFKEV 389
A TK +A + + +LH+ E + V Q Y N +D M+ D K ++
Sbjct: 65 ATMTTKHPDYAILAARIAVSNLHKQTEKVFSTVVQQLHDYVNPKTDKPAPMISD-KIYDI 123
Query: 390 VA--KDSLD 410
V KD LD
Sbjct: 124 VMKHKDELD 132
>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 371
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/80 (17%), Positives = 34/80 (42%)
Frame = +3
Query: 279 EMNEDLTEAVKQNTRRYTNMVSDVVYEMLPDYKFKEVVAKDSLDVYIEHRIMLEARNHRI 458
E + + + + ++++ + ++E LP + + + D+Y + + +H
Sbjct: 203 EHKNSIEKKISNVDKPISDLIENDIHESLPALQNPPIQSHSETDLYADEELDSILMHHER 262
Query: 459 PGEMRDPRNRYPPELIRRFE 518
P PR EL+ +FE
Sbjct: 263 PPIPESPRVEEFEELLNQFE 282
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 27.1 bits (57), Expect = 3.4
Identities = 17/71 (23%), Positives = 35/71 (49%)
Frame = +3
Query: 303 AVKQNTRRYTNMVSDVVYEMLPDYKFKEVVAKDSLDVYIEHRIMLEARNHRIPGEMRDPR 482
A+ +++R Y VS + LP + + +++ + HR+ E+ ++R GE
Sbjct: 88 AMSRSSRYY---VSSELKATLPSLDGRRLSKRNAANHASHHRMPDESASYRTRGEYESSS 144
Query: 483 NRYPPELIRRF 515
R P + +RR+
Sbjct: 145 PRVPQKSLRRY 155
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 26.6 bits (56), Expect = 4.4
Identities = 16/68 (23%), Positives = 32/68 (47%)
Frame = +3
Query: 162 VDFCQTDDEGKKYFKYAEQLTKVAHREQIAFEVVLDDLHEMNEDLTEAVKQNTRRYTNMV 341
+ TD++ + E+ ++ RE+ +D+L + E LT+A + RR ++
Sbjct: 280 IPVASTDEQLFNAHQLLEKKFEILKRERNECNAKIDELQDKLELLTDAYNREKRRARSLE 339
Query: 342 SDVVYEML 365
+ EML
Sbjct: 340 ERMSKEML 347
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 645 VVATYSCSACGAETYQPVRALQFTPPPACTA 737
++++ CS CG QP+R +F P T+
Sbjct: 436 LLSSQPCSLCGFNRTQPLRQFEFRSRPDSTS 466
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 5.9
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +3
Query: 390 VAKDSLDVYIEHRIMLEARNHRIPGEMRDPRNRYPPELIRRFEVYFKD 533
+AK S+ + HR MLE NH E ++ N ELI F V+ +D
Sbjct: 314 IAKGSIGFTMVHRAMLEFINHADSNEAKELLN-LTKELIYEF-VHTRD 359
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 25.8 bits (54), Expect = 7.8
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 141 ESFKNFFVDFCQTDDE 188
+SF NF VD+C+ D+
Sbjct: 53 QSFANFLVDYCKNQDQ 68
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 7.8
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Frame = +3
Query: 120 RDYTADKESFKNFFVDFCQTDDEGKKYFKYAEQLTKVAHREQIAFEVVLDDLHEMNEDLT 299
+D T E KN + DD+ Y K AE + +V+ ++ E+V D N + +
Sbjct: 495 KDSTTPNELSKNANNE--NYDDDSSFYGKLAESVQEVSIADKKDAEIVKDSFKIFNPEDS 552
Query: 300 EAVKQNTRR-YTNMVSDVVYEMLPDYKFKEVV 392
+ K T T V V L + K E +
Sbjct: 553 DLEKNITEALLTGDVLSAVKACLEEKKISEAL 584
>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -1
Query: 616 VTIPRTVTSFPICSALTSLIGTLFDVDKSLKYT 518
V IP+ +S+ + + L +IG LF V ++ T
Sbjct: 79 VHIPKVSSSYSVINTLNGMIGNLFGVKQASTLT 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,086,214
Number of Sequences: 5004
Number of extensions: 63766
Number of successful extensions: 203
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -