Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_L10
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    34   0.022
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    27   3.3  
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc...    27   3.3  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    27   4.4  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    26   7.6  

>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 34.3 bits (75), Expect = 0.022
 Identities = 15/65 (23%), Positives = 34/65 (52%)
 Frame = +2

Query: 344 LECEKLASEKIEIQRHYVMYYEMSYGLNVEMHKQTEIAKRLNAIIAQILPFLSQEHQQQV 523
           LE  +LA E ++++RHY  + +    L  E+H++      + +I+ + +  L +E Q + 
Sbjct: 356 LEIPQLAQELVQLERHYTHFAKAYTALLQEIHRRQTYENCVRSIVDEFVGRLEKEQQAEA 415

Query: 524 ASAVE 538
              ++
Sbjct: 416 KCRID 420


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = +2

Query: 290  DRIKEEFNFLQAQYHNLKLECEKLASEKIEIQRHYVMYYEMSYGLNVE 433
            DR   E++ L    H L    E++ +    +  H++M  +    L VE
Sbjct: 874  DRYGNEYDILLKSEHELDSSLEEMRNRHKSLNEHFIMLSDSMANLQVE 921


>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 401 YYEMSYGLNVEMHKQTEIAKRLNAIIAQIL 490
           Y  +++G+ +   K   IAK+LN  +AQ+L
Sbjct: 195 YSPLTHGIRLNDEKLVPIAKKLNISVAQLL 224


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 24  QLTRAPSDAVTENRVRPTAWSVVLWILCSVCCALYSFS 137
           Q+ R P D +  NR++ T + VV W+  S     YSF+
Sbjct: 43  QIWRGPEDEL--NRLKSTIYPVVFWVDGSEKLHAYSFT 78


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 344 LECEKLASEKIEIQRHYVMYYEMSYGLN-VEMHKQTE 451
           LECEK+  EK +++   ++Y +  + LN + + K+ E
Sbjct: 646 LECEKIRIEKQQMKERKIIYGQWKHLLNALRIRKRIE 682


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,129
Number of Sequences: 5004
Number of extensions: 49889
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)