Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_L10
         (839 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0225 + 28510996-28511080,28511184-28511437,28512964-285130...    32   0.65 
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561...    30   2.6  
05_01_0277 + 2152679-2153038                                           29   3.5  
03_01_0541 + 4064491-4064715,4065018-4065070,4065190-4065226,406...    28   8.1  

>05_07_0225 +
           28510996-28511080,28511184-28511437,28512964-28513085,
           28513399-28513474,28513507-28513616,28513647-28513920
          Length = 306

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 287 CDRIKEEFNFLQAQYHNLKLECEKLASEKIEIQRHYVMYYE 409
           C  +KE FN L+ + H L+L+ E+L S  +++Q    ++ E
Sbjct: 226 CAYLKECFNKLKEENHRLQLQVEQLRSTSLQLQLQLQLHSE 266


>12_02_1286 -
           27555143-27555191,27555290-27555511,27555911-27556162,
           27556683-27557062,27557202-27557311,27557864-27558033,
           27558236-27558444,27558528-27558617,27559125-27559264,
           27559356-27559463,27559626-27559716,27560736-27560852,
           27561497-27561767,27561892-27562193,27562400-27562469,
           27563464-27563702,27564613-27564846,27564943-27565179,
           27565276-27565734
          Length = 1249

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
 Frame = +2

Query: 239 GPPQPGQPIKFTVGESCDRIKEEFNFLQAQYHNLKLECEKLASEKI----EIQRHYVMYY 406
           G P+  Q  +  V E    ++++ ++L  + +NL+ +  +L SEK     EI R   +  
Sbjct: 726 GSPRELQRKELAVSEKITGLEKKLHYLNVEENNLREKLRRLESEKSNIEEEIDRLEPVKE 785

Query: 407 EMSYGLNVEMHKQTEIAKRLNAIIAQI 487
           E+   +  +  +   + K++N I+ +I
Sbjct: 786 ELETRIGKKEREVRVLEKKINEIVDRI 812


>05_01_0277 + 2152679-2153038
          Length = 119

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 120 HSTHCTRSTEQHSTRSVARGSPSQRQTAHVLTARRLRAD 4
           H  H  +   +HS+ S A G+PS   ++   TA R   D
Sbjct: 34  HHRHRAKKPRRHSSSSSAAGTPSSSSSSSTTTATRTGGD 72


>03_01_0541 +
           4064491-4064715,4065018-4065070,4065190-4065226,
           4065409-4065474,4065809-4065907,4066000-4066153,
           4066267-4066343,4066438-4066500
          Length = 257

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +2

Query: 281 ESCDRIKEEFN--FLQAQYHNLKLECEKLASEK 373
           +S DR  E F   F   ++H LK  C KL  EK
Sbjct: 89  QSSDRYVESFKRKFASQEFHALKRRCSKLQGEK 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,685,893
Number of Sequences: 37544
Number of extensions: 352916
Number of successful extensions: 978
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)