Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_L08
(814 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 265 4e-72
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 138 7e-34
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 97 3e-21
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 91 2e-19
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 89 5e-19
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 76 5e-15
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 58 2e-09
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 55 1e-08
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 51 2e-07
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 41 2e-04
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 40 4e-04
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 38 0.001
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 36 0.007
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 36 0.007
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 36 0.009
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 36 0.009
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 35 0.012
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 35 0.016
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 32 0.084
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 32 0.11
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar... 29 1.0
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.4
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 28 1.4
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 28 1.8
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 27 2.4
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 3.2
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 27 3.2
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 26 5.5
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.7
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 25 9.7
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 25 9.7
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 9.7
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 25 9.7
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 265 bits (650), Expect = 4e-72
Identities = 124/166 (74%), Positives = 148/166 (89%)
Frame = +3
Query: 171 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 350
E DLY ++K L+R LE L++QE +IK++ ++LK+E + AQEEVKRIQSVPLVIGQFLEA
Sbjct: 5 EEIDLYNRWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEA 64
Query: 351 VDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQ 530
+DQNT IVGSTTGSNY VRILST+DRELLKPSASVAL +HSNALVD+LPPEADSSISML+
Sbjct: 65 IDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLR 124
Query: 531 ADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRG 668
DE+PDV Y+D+GG+D QKQE+REAVELPLT +LYRQIGI+PPRG
Sbjct: 125 PDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRG 170
Score = 62.9 bits (146), Expect = 5e-11
Identities = 31/39 (79%), Positives = 32/39 (82%)
Frame = +2
Query: 698 GKTMLAKAVAHHTTAAFIRVVGSEXVQKXLGEGPXMVRD 814
GKTML KAVA+ T A FIRVVGSE VQK LGEGP MVRD
Sbjct: 180 GKTMLVKAVANSTAANFIRVVGSEFVQKYLGEGPRMVRD 218
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 138 bits (335), Expect = 7e-34
Identities = 67/159 (42%), Positives = 109/159 (68%), Gaps = 3/159 (1%)
Frame = +3
Query: 201 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSV---PLVIGQFLEAVDQNTGI 371
K+QR+ + L ++EEY+++++R LK + QEE R+ + P+ +G E +D + I
Sbjct: 71 KMQRIHDHLLMEEEYVQNQER-LKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAI 129
Query: 372 VGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDV 551
V ST G YYV I+S +D+++L+P SV LH + ++V +L + D I++++ D+ P
Sbjct: 130 V-STAGPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTE 188
Query: 552 QYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRG 668
Y+DIGG+++Q QEI+EAVELPLTH ELY ++GI+PP+G
Sbjct: 189 SYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKG 227
Score = 58.8 bits (136), Expect = 8e-10
Identities = 26/38 (68%), Positives = 33/38 (86%)
Frame = +2
Query: 698 GKTMLAKAVAHHTTAAFIRVVGSEXVQKXLGEGPXMVR 811
GKT+LAKAVA+ T+A F+RVVGSE +QK LG+GP +VR
Sbjct: 237 GKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPRLVR 274
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 97.1 bits (231), Expect = 3e-21
Identities = 47/166 (28%), Positives = 94/166 (56%)
Frame = +3
Query: 171 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 350
E + KYK + + + ++ R+L K+Y ++++K +QSV +IG+ L+
Sbjct: 3 ERDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQ 62
Query: 351 VDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQ 530
+D IV +++G Y V + +D+ L V+L + ++ +LP E D + +
Sbjct: 63 LDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMS 122
Query: 531 ADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRG 668
++ D+ ++ +GG++ Q +E+RE +ELPL + EL+ ++GI+PP+G
Sbjct: 123 IEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKG 168
Score = 37.1 bits (82), Expect = 0.003
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +2
Query: 698 GKTMLAKAVAHHTTAAFIRVVGSEXVQKXLGEGPXMVRD 814
GKT+LA+AVA F++VV S V K +GE ++R+
Sbjct: 178 GKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIRE 216
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 90.6 bits (215), Expect = 2e-19
Identities = 51/223 (22%), Positives = 117/223 (52%), Gaps = 21/223 (9%)
Frame = +3
Query: 66 IETMEEIGIILPEKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEY 245
+ T+EE+ + + ++++GL Q ++L ++ + L+ ++ ++ + +
Sbjct: 1 MSTLEELDALDQSQQGGSSNNEGLDGI-EQEILAAGIDELNSRTRLLENDIKVMKSEFQR 59
Query: 246 IKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVD-------------QNT------- 365
+ E+ + ++ QE++ + +P ++G +E +D QN+
Sbjct: 60 LTHEKSTMLEKIKENQEKISNNKMLPYLVGNVVEILDMQPDEVDVQESANQNSEATRVGK 119
Query: 366 -GIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEK 542
++ ++T ++ ++ ++ E L P + ++K S ++D LP E DS + ++ DEK
Sbjct: 120 SAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDEK 179
Query: 543 PDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGC 671
P +YSDIGG+ Q +E+ EA+ LP+ + +R++G++PP+GC
Sbjct: 180 PTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGC 222
Score = 39.1 bits (87), Expect = 7e-04
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +2
Query: 698 GKTMLAKAVAHHTTAAFIRVVGSEXVQKXLGEGPXMVRD 814
GKT+LA+A A + A F+++ + VQ +G+G +VRD
Sbjct: 231 GKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLVRD 269
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 89.4 bits (212), Expect = 5e-19
Identities = 45/140 (32%), Positives = 78/140 (55%), Gaps = 1/140 (0%)
Frame = +3
Query: 252 DEQRN-LKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDR 428
+ QRN L +EE++ +Q +G+ ++ + +N +V Y V I ID
Sbjct: 42 EAQRNGLNARVRLLREEIQLLQEPGSYVGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDI 101
Query: 429 ELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAV 608
+ +KP+ VAL S L+ +LP + D +S++ ++ PD Y +GG++ Q +EI+E +
Sbjct: 102 KEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVI 161
Query: 609 ELPLTHVELYRQIGIEPPRG 668
ELP+ H EL+ +GI P+G
Sbjct: 162 ELPVKHPELFESLGIPQPKG 181
Score = 58.8 bits (136), Expect = 8e-10
Identities = 27/39 (69%), Positives = 31/39 (79%)
Frame = +2
Query: 698 GKTMLAKAVAHHTTAAFIRVVGSEXVQKXLGEGPXMVRD 814
GKT+LA+AVAHHT FIRV GSE VQK +GEG MVR+
Sbjct: 191 GKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGSRMVRE 229
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 76.2 bits (179), Expect = 5e-15
Identities = 34/108 (31%), Positives = 62/108 (57%)
Frame = +3
Query: 345 EAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISM 524
++ ++N ++ + + V + + ++ V ++ A+ LPP+ D S++M
Sbjct: 108 QSAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTM 167
Query: 525 LQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRG 668
+Q +EKPDV Y D+GG Q + +RE VELPL E + ++GI+PP+G
Sbjct: 168 MQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKG 215
Score = 54.4 bits (125), Expect = 2e-08
Identities = 25/39 (64%), Positives = 31/39 (79%)
Frame = +2
Query: 698 GKTMLAKAVAHHTTAAFIRVVGSEXVQKXLGEGPXMVRD 814
GKT+ A+AVA+ T A FIRV+GSE VQK +GEG MVR+
Sbjct: 225 GKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 263
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 57.6 bits (133), Expect = 2e-09
Identities = 22/44 (50%), Positives = 34/44 (77%)
Frame = +3
Query: 537 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRG 668
E P+V +SDIGG + KQ+++E+VE PLTH E + ++G+ PP+G
Sbjct: 541 ESPNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKG 584
Score = 43.2 bits (97), Expect = 5e-05
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +3
Query: 549 VQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRG 668
V +S IGG+ Q +IR+ VELP + EL++ I PPRG
Sbjct: 276 VTFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRG 315
Score = 35.5 bits (78), Expect = 0.009
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +2
Query: 695 CGKTMLAKAVAHHTTAAFIRVVGSEXVQKXLGEGPXMVR 811
C KT+ AKA+A T FI V G E K +GE VR
Sbjct: 593 CSKTITAKAIATETGLNFIAVKGPELFDKFVGESERAVR 631
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 698 GKTMLAKAVAHHTTAAFIRVVGSEXVQKXLGEGPXMVR 811
GKTM+ +AVA A + G V K LGE +R
Sbjct: 325 GKTMVMRAVAAEANAQVFTIDGPSVVGKYLGETESRLR 362
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 55.2 bits (127), Expect = 1e-08
Identities = 24/41 (58%), Positives = 30/41 (73%)
Frame = +3
Query: 546 DVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRG 668
+V Y DIGG Q +IRE VELPL H +L++ IGI+PPRG
Sbjct: 220 EVGYDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRG 260
Score = 47.6 bits (108), Expect = 2e-06
Identities = 17/44 (38%), Positives = 32/44 (72%)
Frame = +3
Query: 537 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRG 668
E P+V++ DIGG++ K+E+RE V++P+ + E + + G+ P +G
Sbjct: 490 EVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKG 533
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +2
Query: 698 GKTMLAKAVAHHTTAAFIRVVGSEXVQKXLGEGPXMVRD 814
GKT+LAKA+A+ +A FI V G E + GE VRD
Sbjct: 543 GKTLLAKAIANECSANFISVKGPELLSMWFGESESNVRD 581
Score = 33.9 bits (74), Expect = 0.028
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +2
Query: 698 GKTMLAKAVAHHTTAAFIRVVGSEXVQKXLGEGPXMVR 811
GKT++A+AVA+ T A F + G E + K GE +R
Sbjct: 270 GKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLR 307
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 51.2 bits (117), Expect = 2e-07
Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 8/154 (5%)
Frame = +3
Query: 231 VQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQN------TGIVGSTTGS 392
+ E+ ++ LK E +E++ Q + LV E D N T ++ + S
Sbjct: 60 ILEKVVEKVLDTLKAE---VEEKLASSQDLVLVDSDMEEQSDSNLMEVKDTNVINKSITS 116
Query: 393 NYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKP--DVQYSDI 566
+ L ID E K S S D S +A+ +P D+ SDI
Sbjct: 117 LWSSPNLKEIDGEDEKKSVGQESITGSAKRKDRRSKTNGSKRQKAEANREPPSDISLSDI 176
Query: 567 GGMDTQKQEIREAVELPLTHVELYRQIGIEPPRG 668
GG+D E+ E V +P+ H E+Y+ GI PPRG
Sbjct: 177 GGLDDCINELLELVAMPIKHPEVYQYTGIHPPRG 210
Score = 42.7 bits (96), Expect = 6e-05
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = +2
Query: 695 CGKTMLAKAVAHHTTAAFIRVVGSEXVQKXLGEGPXMVR 811
CGKT+LAKAVA+ + A FI + G E + K +GE VR
Sbjct: 537 CGKTLLAKAVANESKANFISIRGPELLNKYVGESERAVR 575
Score = 35.9 bits (79), Expect = 0.007
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +3
Query: 543 PDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRG 668
P V +++IG + + + E++ A+ P+ ELY+ +GI P G
Sbjct: 487 PGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTG 528
Score = 32.3 bits (70), Expect = 0.084
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 695 CGKTMLAKAVAHHTTAAFIRVVGSEXVQKXLGEGPXMVRD 814
CGKTMLA A+A+ FI + V GE VR+
Sbjct: 219 CGKTMLANALANELGVPFISISAPSIVSGMSGESEKKVRE 258
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +2
Query: 698 GKTMLAKAVAHHTTAAFIRVVGSEXVQKXLGEGPXMVRD 814
GKT+LAKA A F+ V GSE ++ +G GP VRD
Sbjct: 341 GKTLLAKATAGEANVPFLSVSGSEFLEMFVGVGPSRVRD 379
Score = 34.3 bits (75), Expect = 0.021
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +3
Query: 510 SSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRG 668
S M + ++++D+ G+D K+EI E V+ L + + Y ++G + PRG
Sbjct: 280 SRAKMFNHETDIKIKFADVAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIPRG 331
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 39.9 bits (89), Expect = 4e-04
Identities = 13/40 (32%), Positives = 27/40 (67%)
Frame = +3
Query: 549 VQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRG 668
+ + +GG+D +++E V LPL + E++++ ++PPRG
Sbjct: 263 LSFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRG 302
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 38.3 bits (85), Expect = 0.001
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +3
Query: 543 PDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRG 668
P V + DIGG++ K +R+ ++LPL EL+ Q G++P G
Sbjct: 650 PKVNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQ-GLKPRSG 690
Score = 33.9 bits (74), Expect = 0.028
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 698 GKTMLAKAVAHHTTAAFIRVVGSEXVQKXLGEGPXMVRD 814
GKT+LAKAVA + F+ + G E + +GE VR+
Sbjct: 700 GKTLLAKAVATELSLEFVSIKGPELLNMYVGESEANVRN 738
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 35.9 bits (79), Expect = 0.007
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +2
Query: 698 GKTMLAKAVAHHTTAAFIRVVGSEXVQKXLGEGPXMVR 811
GKTMLA+AVA + + F + S K LGE +VR
Sbjct: 504 GKTMLARAVATESRSVFFSISASSLTSKFLGESEKLVR 541
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 35.9 bits (79), Expect = 0.007
Identities = 14/43 (32%), Positives = 28/43 (65%)
Frame = +3
Query: 540 KPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRG 668
+ ++ ++ IGG++ +++E V LPL + E++ + I PPRG
Sbjct: 366 RENLDFNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRG 408
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 35.5 bits (78), Expect = 0.009
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +2
Query: 698 GKTMLAKAVAHHTTAAFIRVVGSEXVQKXLGEGPXMVR 811
GKTMLA+AVA A F + S K LG+ +VR
Sbjct: 424 GKTMLARAVATEAKATFFSISASSLTSKYLGDSEKLVR 461
Score = 32.3 bits (70), Expect = 0.084
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 549 VQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRG 668
V +SDI G+D K ++EAV P EL++ + EP +G
Sbjct: 376 VYWSDIAGLDDAKNSLKEAVIYPFLRPELFQGLR-EPVQG 414
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 35.5 bits (78), Expect = 0.009
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = +2
Query: 695 CGKTMLAKAVAHHTTAAFIRVVGSEXVQKXLGEGPXMV 808
CGKTMLAKA+A + A FI V K GE +V
Sbjct: 136 CGKTMLAKALAKQSQATFINVSVGLLTDKWFGESNKLV 173
Score = 31.5 bits (68), Expect = 0.15
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 519 SMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIG--IEPPRG 668
S L + DV + DIGGMD ++ + V PL + E++ G + P+G
Sbjct: 76 SQLVLPSEIDVSFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKG 127
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 35.1 bits (77), Expect = 0.012
Identities = 16/56 (28%), Positives = 33/56 (58%)
Frame = +3
Query: 471 SNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELY 638
+N +D + S+++ EKP+V++ DI G++ K+ ++E V LP+ +L+
Sbjct: 100 ANEALDSDAKKLRSALTSAILVEKPNVRWDDIAGLENAKEALKETVLLPIKLPQLF 155
Score = 33.9 bits (74), Expect = 0.028
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 698 GKTMLAKAVAHHTTAAFIRVVGSEXVQKXLGEGPXMVR 811
GK+ LAKAVA + F + S+ V K +GE +VR
Sbjct: 174 GKSYLAKAVATEAGSTFFSISSSDLVSKWMGESERLVR 211
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 34.7 bits (76), Expect = 0.016
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 540 KPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRG 668
K +++ DI GM K+ +R+ +E P+ + +Y+Q + P G
Sbjct: 600 KSSIRWIDIAGMQEAKEAVRDIIESPVKYSLIYKQCRLRLPTG 642
Score = 34.7 bits (76), Expect = 0.016
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 695 CGKTMLAKAVAHHTTAAFIRVVGSEXVQKXLGEGPXMVRD 814
CGKT LA A++ FI + G E + K +G+ VRD
Sbjct: 651 CGKTYLASAISSTFPVQFISIKGPELLDKYIGKSEQGVRD 690
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 32.3 bits (70), Expect = 0.084
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -3
Query: 383 GAANYACILINCLK-KLSNDKRNRLYALYFFLCMQIFFLQVSLFIFNVLFLY 231
G Y C+++ + ++N +N+ A FF C+ + F Q++L+ +F Y
Sbjct: 182 GHFQYNCVMLGLVMYAIANLLKNQYVAATFFFCLALTFKQMALYFAPPIFFY 233
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 31.9 bits (69), Expect = 0.11
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 698 GKTMLAKAVAHHTTAAFIRVVGSEXVQKXLGEGPXMVRD 814
GKTMLA+AVA F + GS+ + +G G VR+
Sbjct: 312 GKTMLARAVAGEANVPFFFMSGSQFDEMYVGVGAKRVRE 350
Score = 29.5 bits (63), Expect = 0.59
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +3
Query: 546 DVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRG 668
+V++SD+ G+D K+E+ E V+ L + ++G + PRG
Sbjct: 263 NVRFSDVQGVDEAKEELEEIVDF-LRDPTHFTRLGGKLPRG 302
>SPBC336.08 |spc24||spindle pole body protein
Spc24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 198
Score = 28.7 bits (61), Expect = 1.0
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 153 QSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKD--EQRNLKKEYLHAQEEVKRI 311
QSF E E E TK+K L R LE E +K E +E L ++E RI
Sbjct: 36 QSFREKELEGSQTKFKVLSRKLEISTQAMESLKQTAESSQHAEEILSREKEKFRI 90
>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 608
Score = 28.3 bits (60), Expect = 1.4
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +3
Query: 438 KPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQY-SDIGGMDTQKQE--IREAV 608
KPS++V+ S+A DV+ + S+I+ D K DV + + D Q +E I+E
Sbjct: 244 KPSSNVSRGTPSSAHSDVIEISSSSAIARTSGDRKDDVLFDTSTQRRDNQTREMFIQEQA 303
Query: 609 EL 614
+L
Sbjct: 304 QL 305
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = -3
Query: 314 LYALYFFLCMQIFFLQVSLFIFNVLFL 234
+++L+FFLCM+ FF +++ F LFL
Sbjct: 360 IFSLFFFLCMRNFFPGFTIY-FPALFL 385
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 27.9 bits (59), Expect = 1.8
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +3
Query: 399 YVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMD 578
+V L T + +A++ K D L + D + +Q+D KPDV+ SD MD
Sbjct: 227 FVLFLFTFEETTFDRAAAID-RKQIQISNDQLTVKEDFDLKDMQSDIKPDVEKSD--AMD 283
Query: 579 TQKQEI 596
K ++
Sbjct: 284 DSKMKV 289
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -1
Query: 304 FTSSCACKYSFFKFRCSSLMYSSCTSKNSNILW 206
F C S +F C ++ TSK N+LW
Sbjct: 313 FPEPSFCSASKIRFNCDETYAATITSKYPNVLW 345
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.1 bits (57), Expect = 3.2
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +3
Query: 102 EKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEY 281
EK+ + K L A + E+E L + Q+ LE +E K E++ LK+E
Sbjct: 593 EKEKKRDKKKQLKLAKEEERQRREAERLAEQ--AAQKALEAKRQEEARKKREEQRLKREQ 650
Query: 282 LHAQEEVKR 308
Q+E++R
Sbjct: 651 EKKQQELER 659
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 27.1 bits (57), Expect = 3.2
Identities = 33/154 (21%), Positives = 68/154 (44%), Gaps = 3/154 (1%)
Frame = +3
Query: 96 LPEKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKK 275
L +K + +TD+ +S +E S+++ TK + + + +K E+ L +
Sbjct: 317 LQDKLELLTDAYNREKRRARSLEERMSKEMLTKLGESNVDDGMAASRYDTVKREKERLSE 376
Query: 276 EYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASV 455
QE+ + IQSV + +D+ + I+ + +L+ + +LK
Sbjct: 377 HLKSLQEQYEHIQSVYKNV-----LLDRESYIMRLGNKISENNELLN--ENRVLKEKLQT 429
Query: 456 ALHKHSNALVDVLPPEADSS---ISMLQADEKPD 548
L K + + + A++S +SM +ADE+ D
Sbjct: 430 YLDKKESNVTSKIKSTAENSSKPLSMNEADERKD 463
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 270 KKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGI 371
K ++ A E+ + VPL +F + VDQN G+
Sbjct: 51 KSKHSEAVVEILKSAKVPLKNKEFSDLVDQNIGV 84
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 300 VKRIQSVPLVIGQFLEAVDQN 362
+K+ +SVP + GQF+E V+ N
Sbjct: 193 LKKSKSVPRLRGQFMEPVEHN 213
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +3
Query: 618 LTHVELYRQIGIEPPR--GCAHVWTTRFVAKLCWLKLLRITLQL 743
L + +YR + P R GC+ W ++ W+ L+ I QL
Sbjct: 533 LVYQGIYRYVN-NPERFLGCSAYWGLALISSSAWIFLIAILAQL 575
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 177 EDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQS 317
E+ + QR +E QEE IK+E+ ++E +EEV +S
Sbjct: 333 EEAVKSLPETQRTTSRIETQEEEIKEEEMEGEEE--EEEEEVPNYES 377
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.4 bits (53), Expect = 9.7
Identities = 22/70 (31%), Positives = 30/70 (42%)
Frame = +3
Query: 354 DQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQA 533
D+NT + SN + I ELL PS A+ +SN D+ P SS + A
Sbjct: 14 DENTDALFKLHTSNRKSANMFGIKSELLNPSELSAVGSYSN---DICPNRQSSSST--AA 68
Query: 534 DEKPDVQYSD 563
D P S+
Sbjct: 69 DTSPSTNASN 78
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 9.7
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 294 EEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHK 467
EE Q P +GQ+ + + Q I Y++RI+ ++LK S + +HK
Sbjct: 212 EENLDFQESPHYLGQYKKLLSQAMDIF-----KPYFIRIIKQTTDQVLKDSKKMDVHK 264
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,165,406
Number of Sequences: 5004
Number of extensions: 63288
Number of successful extensions: 272
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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