Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_L06
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...   107   2e-24
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    29   0.77 
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   1.8  
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    27   2.4  
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    27   4.1  
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces...    27   4.1  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   9.5  

>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score =  107 bits (257), Expect = 2e-24
 Identities = 59/134 (44%), Positives = 79/134 (58%)
 Frame = +2

Query: 158 DDLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREH 337
           +DLSEED +L+ +L +LV  +     +L   +L  L  +IRTST+SMT+VPKPLKFLR H
Sbjct: 44  EDLSEEDLQLKNDLELLVQAVQDATPELVGSSLTQLKEIIRTSTSSMTAVPKPLKFLRPH 103

Query: 338 YPALKQVYEKITDEKTKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGDWGX 517
           Y  L ++Y+       K   AD++SVL M  S T     K E LKY L G  ++   WG 
Sbjct: 104 YFTLVKIYDSWPQSPQKTQLADILSVLGMSYSNT----SKHESLKYRLQGVTTDPSLWGH 159

Query: 518 EYVRXXEGEIAEKW 559
           EYVR    EI E++
Sbjct: 160 EYVRHLASEIEEEF 173


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = +2

Query: 170  EEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFL 328
            EE + LQEE+N++  K L + V+ Y   L M+ +L   + +S++   +   +L
Sbjct: 1609 EETEWLQEEVNIMKIKELTSTVNKYREQLAMVQSLNEHAESSLSKAERSKNYL 1661


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = +2

Query: 239 LYFPALQM-LSNLIRTSTTSMTSVPKPLKFLREHY-PALKQVYEKITDEKTKKFCADVIS 412
           ++FPA +  ++ +I TS   + +      FL  H  P L+ +YE + +EK++ F +   S
Sbjct: 204 VFFPAAKATITQMIETSIRFLRT------FLDMHIKPQLQHIYESVVEEKSEAFASATSS 257

Query: 413 VLAMGVSGTL 442
            +   +S ++
Sbjct: 258 KILSEMSASM 267


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 514 SPITYI*QCSQKTILQTLSLFCNFQSTAYAHR 419
           SP+TY+   S ++ILQTL        T Y +R
Sbjct: 325 SPVTYMISVSARSILQTLLAVAFLGETLYGNR 356


>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 167 KDHHLEPLRAQLFPSLALQFY 105
           +DH L+P R+ LF SL L  Y
Sbjct: 222 QDHELKPKRSGLFSSLCLPIY 242


>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 356

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 21/90 (23%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
 Frame = +2

Query: 158 DDLSEEDKR-LQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLRE 334
           ++LSEED   + +EL +L D     E D +     ++  L+ T    +T+  +  + +R 
Sbjct: 247 EELSEEDMDGMFDELQLLPDDKK-REPDHF-----IMKTLVETLVL-LTATREGREHMRR 299

Query: 335 H--YPALKQVYEKITDEKTKKFCADVISVL 418
              YP +++++  + DE+ ++ C  ++ +L
Sbjct: 300 RKVYPIIRELHLNVDDEEIREVCDQLVQML 329


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +2

Query: 248  PALQMLSNLIRTSTTSMTSVPKPLK---FLREHYPALKQVYEKITDEKTKKFCADVISVL 418
            P++  L   I   + +M    + LK   ++ E  PAL  ++  I +EK K F +  I + 
Sbjct: 1805 PSMSALCRFIIYKSVTMLQNGEVLKSGDYVTEFIPALLDMHVHIPEEKKKSFLSMSIPIA 1864

Query: 419  A 421
            A
Sbjct: 1865 A 1865


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,995,124
Number of Sequences: 5004
Number of extensions: 30526
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)