Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_L06
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1276 - 28907726-28907842,28908012-28908062,28908146-289082... 118 4e-27
02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,256... 115 4e-26
09_02_0460 + 9567656-9567766,9567849-9567949,9568527-9568647,956... 112 4e-25
11_04_0450 - 17847676-17847841,17848024-17848131,17848223-178483... 30 1.9
07_03_1278 - 25413432-25413652,25413678-25413769,25413944-25414146 29 3.2
08_01_0680 - 5958066-5960253,5960707-5961503 28 7.5
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338... 28 9.9
>06_03_1276 -
28907726-28907842,28908012-28908062,28908146-28908254,
28908345-28908430,28908537-28908650,28908731-28908790,
28909088-28909303,28909401-28909514,28910632-28910853,
28910946-28911050,28911136-28911276,28911368-28911472,
28911538-28911645,28911753-28911911,28912060-28912140,
28912219-28912330,28912433-28912515,28912631-28912669,
28913061-28913126,28913601-28913643,28913969-28914036,
28914264-28914323,28914409-28914529,28915167-28915267,
28915354-28915494
Length = 873
Score = 118 bits (285), Expect = 4e-27
Identities = 59/134 (44%), Positives = 88/134 (65%)
Frame = +2
Query: 158 DDLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREH 337
DDLSEED+ L+E+L + V + + + AL+ + IR++T+SMTSVPKPLKFLR H
Sbjct: 45 DDLSEEDQALKEQLELYVVRAQDTDPGVQKLALESMRQEIRSATSSMTSVPKPLKFLRPH 104
Query: 338 YPALKQVYEKITDEKTKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGDWGX 517
Y LK +E + + KK+ AD++SVLA+ T+ +RE L Y ++G+ ++G WG
Sbjct: 105 YGTLKAYFETMPESDLKKYMADILSVLAL----TMSAEGERESLNYRMIGSEGDIGSWGH 160
Query: 518 EYVRXXEGEIAEKW 559
EYVR GEIA+++
Sbjct: 161 EYVRNLAGEIAQEF 174
>02_01_0356 +
2563773-2563898,2564031-2564131,2564375-2564498,
2564592-2564651,2564762-2564829,2565520-2565562,
2566026-2566091,2566237-2566275,2566375-2566457,
2566654-2566765,2566840-2566923,2567026-2567184,
2567268-2567372,2567451-2567555,2567661-2567801,
2567920-2568024,2568111-2568335,2568762-2568875,
2568963-2569178,2569674-2569733,2569827-2569940,
2570047-2570132,2570211-2570319,2570408-2570586,
2570673-2570741,2570792-2571005
Length = 968
Score = 115 bits (277), Expect = 4e-26
Identities = 61/135 (45%), Positives = 88/135 (65%), Gaps = 1/135 (0%)
Frame = +2
Query: 158 DDLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREH 337
DDLSEED L+E+L + V + + + AL+ + IR++T+SMTSVPKPLKFLR H
Sbjct: 40 DDLSEEDLALKEQLELYVVRAQDADPGVQKLALESMRQEIRSATSSMTSVPKPLKFLRPH 99
Query: 338 YPALKQVYEKITDEK-TKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGDWG 514
Y LK +E + + K++ AD++SVLA+ T+ +RE LKY LLG+ ++G WG
Sbjct: 100 YGTLKSYFETMPESSDLKRYMADILSVLAL----TMSAEGERESLKYRLLGSEGDIGSWG 155
Query: 515 XEYVRXXEGEIAEKW 559
EYVR GEIA+++
Sbjct: 156 HEYVRNLAGEIAQEF 170
>09_02_0460 +
9567656-9567766,9567849-9567949,9568527-9568647,
9568733-9568792,9569022-9569089,9569469-9569535,
9569586-9569666,9570152-9570217,9570372-9570410,
9570527-9570609,9570712-9570823,9570902-9570982,
9571132-9571290,9571397-9571504,9571570-9571674,
9571765-9571905,9572007-9572147,9572205-9572426,
9573617-9573730,9573830-9574045,9574373-9574432,
9574513-9574626,9574735-9574820,9574904-9575012,
9575099-9575277,9575357-9575429
Length = 938
Score = 112 bits (269), Expect = 4e-25
Identities = 56/124 (45%), Positives = 83/124 (66%)
Frame = +2
Query: 158 DDLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREH 337
DDLSEED+ L+E+L + V + + + AL+ + IR++T+SMTSVPKPLKFLR H
Sbjct: 35 DDLSEEDQALKEQLELYVVRAQDPDPGVQKLALESMRQEIRSATSSMTSVPKPLKFLRPH 94
Query: 338 YPALKQVYEKITDEKTKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGDWGX 517
Y LK +E + + + KK+ AD++SVLA+ T+ +RE LKY ++G+ ++G WG
Sbjct: 95 YGILKAYFETMPESELKKYMADILSVLAL----TMSAEGERESLKYRMIGSEGDIGSWGH 150
Query: 518 EYVR 529
EYVR
Sbjct: 151 EYVR 154
>11_04_0450 -
17847676-17847841,17848024-17848131,17848223-17848377,
17848471-17848560,17848650-17848748,17848862-17848928,
17849028-17849124,17849357-17849492,17849579-17849634,
17849718-17849801,17849909-17850125
Length = 424
Score = 30.3 bits (65), Expect = 1.9
Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 1/109 (0%)
Frame = +2
Query: 191 EELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREHYPALKQVYEKI 370
E+ + V + L E+ YF + TS + + LK+ A+ Y +
Sbjct: 232 EKATLSVKRRLACELVSYFSQAHYCLSGCDTSDSFGKKLLLFLKWKCMEAKAVAYYYHGL 291
Query: 371 TDEKTKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNV-GDWG 514
+K + + + +V + + L KR CL +CL ++ V WG
Sbjct: 292 VLDKGNEASSHISAVCCLSAADDLVADSKRACLSFCLANPITRVPPPWG 340
>07_03_1278 - 25413432-25413652,25413678-25413769,25413944-25414146
Length = 171
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/65 (29%), Positives = 26/65 (40%)
Frame = -2
Query: 549 AISPSXCLTYSXPQSPTFDNVPRRQYFKHSLFSATSRVPLTPIAKTEITSAQNFFVFSSV 370
A+ L PQ P F VP R ++ TS PL P++ E NF
Sbjct: 46 AVGGGGVLPPQAPQPPRF-GVPPRFQVSEAMEEQTSSEPLDPLSHEEFLHMSNFVSSLYA 104
Query: 369 IFSYT 355
+ S+T
Sbjct: 105 VNSFT 109
>08_01_0680 - 5958066-5960253,5960707-5961503
Length = 994
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +2
Query: 257 QMLSNLIRTSTTSMTSVPKPLKFLREHYPALKQVYEKITD 376
+ L+ L+ T++ + K + FL++ P + + EK+ D
Sbjct: 18 EKLTKLVEDKCTNLVGMSKNIVFLKDELPTMSALLEKLED 57
>10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,
3384640-3384709,3385878-3386002,3387128-3387268,
3387362-3387519,3387644-3387803,3390136-3390213,
3390326-3390385,3390473-3390528,3391886-3392090,
3394107-3394192,3394296-3394406,3394536-3394607,
3395453-3395538,3395730-3395878,3396107-3396250,
3396335-3396442,3396997-3397027,3397609-3397713,
3398283-3398407,3398807-3398950,3399073-3399177,
3400748-3400799,3401549-3401696,3401936-3402130,
3402404-3402647,3403152-3403259,3403887-3404034,
3405467-3405525,3405876-3405945,3407008-3407333,
3407666-3409204,3410526-3410733,3410870-3410906,
3411024-3411072,3411143-3411271
Length = 2025
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +2
Query: 266 SNLIRTSTTSMTSVPKPLKFLREHYPALKQVYEKITDEKT--KKFCADVISVLAMGVSGT 439
+ L+ S + ++ V LK L E + EK+ +T + + + A +
Sbjct: 984 TELMDRSPSILSGVLDLLKALWESGAQFIYILEKLRSSRTFWENLSCCIRAAFASYPIDS 1043
Query: 440 LEVAEKRECLKYCLLGTLSNV 502
+E ++++ L+YC LGT+ +
Sbjct: 1044 VETVDEKKSLRYCCLGTIFEI 1064
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,064,018
Number of Sequences: 37544
Number of extensions: 174151
Number of successful extensions: 445
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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