Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_L06
(799 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome re... 134 9e-32
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 33 0.24
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 33 0.24
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 33 0.24
Z73102-17|CAA97418.2| 375|Caenorhabditis elegans Hypothetical p... 28 6.7
U21317-6|AAA62527.1| 313|Caenorhabditis elegans Hypothetical pr... 28 8.9
AC006757-4|AAF60545.1| 610|Caenorhabditis elegans Hypothetical ... 28 8.9
>AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 1 protein.
Length = 981
Score = 134 bits (323), Expect = 9e-32
Identities = 63/134 (47%), Positives = 91/134 (67%)
Frame = +2
Query: 158 DDLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREH 337
+++SEED++L+E+LN+LV +L + LY P+L+ + LIR STTSMTSVPKPLKF+R H
Sbjct: 31 EEMSEEDQKLEEDLNLLVQRLSEPDTTLYKPSLETMRTLIRASTTSMTSVPKPLKFMRPH 90
Query: 338 YPALKQVYEKITDEKTKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGDWGX 517
Y +K+++ I KK CAD+ISVLAM E+ + + Y +LG+ +GDWG
Sbjct: 91 YNKMKEIFTSIVAPDVKKLCADIISVLAMTSD------ERTDTINYRILGSHEPIGDWGH 144
Query: 518 EYVRXXEGEIAEKW 559
EYVR E++E+W
Sbjct: 145 EYVRHLAMEMSEEW 158
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 33.1 bits (72), Expect = 0.24
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +2
Query: 158 DDLSEEDKRLQEELNMLVDKL--LGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLR 331
++L E+ RL+ E+N L DK L NE + ++ IR S ++ K L LR
Sbjct: 672 ENLLRENNRLKSEVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRNIQKDLDDLR 731
Query: 332 EHYPALKQVYEKITDE 379
E Y + EKI E
Sbjct: 732 EKYDRVHTDNEKILGE 747
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 33.1 bits (72), Expect = 0.24
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +2
Query: 158 DDLSEEDKRLQEELNMLVDKL--LGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLR 331
++L E+ RL+ E+N L DK L NE + ++ IR S ++ K L LR
Sbjct: 745 ENLLRENNRLKSEVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRNIQKDLDDLR 804
Query: 332 EHYPALKQVYEKITDE 379
E Y + EKI E
Sbjct: 805 EKYDRVHTDNEKILGE 820
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 33.1 bits (72), Expect = 0.24
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +2
Query: 158 DDLSEEDKRLQEELNMLVDKL--LGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLR 331
++L E+ RL+ E+N L DK L NE + ++ IR S ++ K L LR
Sbjct: 745 ENLLRENNRLKSEVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRNIQKDLDDLR 804
Query: 332 EHYPALKQVYEKITDE 379
E Y + EKI E
Sbjct: 805 EKYDRVHTDNEKILGE 820
>Z73102-17|CAA97418.2| 375|Caenorhabditis elegans Hypothetical
protein B0035.16 protein.
Length = 375
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 434 GTLEVAEKRECLKYCLLGTLSNVGDWGXEYVRXXEGEIAEK 556
G EVA+K E + C +G D+ EY+ G I K
Sbjct: 191 GFQEVAKKPESMGICFIGKKKRFSDFLDEYIEPKPGRILLK 231
>U21317-6|AAA62527.1| 313|Caenorhabditis elegans Hypothetical
protein B0495.8a protein.
Length = 313
Score = 27.9 bits (59), Expect = 8.9
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +2
Query: 335 HYPALKQVYEKITDEKTKKFCADVISVLAMGVS-GTLEVAEKRECLKYCLLGTLSNVGDW 511
H PA K YE+ EK + D ++ V +E+A+ RE L+ + S D
Sbjct: 62 HEPAHKADYERAQKEKDHFYDVDAFEIIEHAVHLVDIEIAKVREKLEDDVKTQTSQAADS 121
Query: 512 GXEYVRXXEGEIAE 553
+ V E +IA+
Sbjct: 122 KAKQVAEIEEKIAK 135
>AC006757-4|AAF60545.1| 610|Caenorhabditis elegans Hypothetical
protein Y40C7B.5 protein.
Length = 610
Score = 27.9 bits (59), Expect = 8.9
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Frame = +2
Query: 161 DLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSM----TSVPKPLKFL 328
D SEED L L LVDKL + L +L+ + N + S S+ + L+F
Sbjct: 493 DHSEEDNILLSSLKCLVDKL--ETISLQNISLEDVVNRLSESYKSLLARIVELESELEFE 550
Query: 329 REHYPALKQVYEKITDEKTKKF 394
+E AL++ K + +K +
Sbjct: 551 KEKNRALQETINKSSSADSKLY 572
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,014,866
Number of Sequences: 27780
Number of extensions: 168547
Number of successful extensions: 574
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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