Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_L04
(951 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0186 - 15582925-15584334 33 0.33
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 26 3.5
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 23 4.0
01_06_0046 + 25943183-25943590 29 5.4
01_01_0401 + 3043634-3043894,3045610-3045849 29 7.2
05_04_0011 + 17139322-17139451,17139552-17140174 25 8.7
07_03_1080 + 23815232-23817040 28 9.5
02_05_0962 + 33114226-33114684,33114806-33114853,33115166-331152... 28 9.5
01_03_0005 + 11568545-11569119,11569179-11569191 28 9.5
>10_08_0186 - 15582925-15584334
Length = 469
Score = 33.1 bits (72), Expect = 0.33
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 380 GGDHPXXVXFSPPPXXPPXKXXKXFXPPP 294
GG + F+PPP PP + + F PPP
Sbjct: 59 GGPRDNKLPFTPPPTAPPDQLYQPFHPPP 87
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 25.8 bits (54), Expect(2) = 3.5
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 350 SPPPXXPPXKXXKXFXPPPR 291
+PPP PP K PPPR
Sbjct: 623 APPPPPPPGKPGGPPPPPPR 642
Score = 22.2 bits (45), Expect(2) = 3.5
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = -2
Query: 512 PXKKKXXPPPPXPP 471
P + PPPP PP
Sbjct: 617 PPRPPGAPPPPPPP 630
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 23.4 bits (48), Expect(3) = 4.0
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = -2
Query: 347 PPPXXPPXKXXKXFXPPP 294
PPP PP + PPP
Sbjct: 604 PPPPPPPILPNRSVPPPP 621
Score = 21.4 bits (43), Expect(3) = 4.0
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -2
Query: 353 FSPPPXXPP 327
FSPPP PP
Sbjct: 561 FSPPPPPPP 569
Score = 21.0 bits (42), Expect(3) = 4.0
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = -2
Query: 512 PXKKKXXPPPPXPP 471
P PPPP PP
Sbjct: 537 PSPTAAAPPPPPPP 550
>01_06_0046 + 25943183-25943590
Length = 135
Score = 29.1 bits (62), Expect = 5.4
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = -2
Query: 380 GGDHPXXVXFSPPPXXPPXKXXKXFXPPPRGXXXGXXXAP 261
G D P PPP PP + PPP G P
Sbjct: 40 GADCPVLYPSPPPPALPPPPPYYYYSPPPPAYYPGSYCPP 79
>01_01_0401 + 3043634-3043894,3045610-3045849
Length = 166
Score = 28.7 bits (61), Expect = 7.2
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = -2
Query: 524 GGGGPXKKKXXPPPPXPPXXXXXXXGXXXXXXXXXVGAP 408
GGGG KK PPP PP +GAP
Sbjct: 22 GGGGGGKKLHQSPPPSPPEAAKCCADGVPVVMGEPLGAP 60
>05_04_0011 + 17139322-17139451,17139552-17140174
Length = 250
Score = 25.0 bits (52), Expect(2) = 8.7
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -2
Query: 521 GGGPXKKKXXPPPPXPP 471
G P K PPPP PP
Sbjct: 129 GPDPVHNKFQPPPPSPP 145
Score = 21.8 bits (44), Expect(2) = 8.7
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = -2
Query: 377 GDHPXXVXFSPPPXXPP 327
G P F PPP PP
Sbjct: 161 GPDPIHNEFQPPPPPPP 177
>07_03_1080 + 23815232-23817040
Length = 602
Score = 28.3 bits (60), Expect = 9.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 473 GGXGGGGXFFFXXXPPPP 526
GG GGGG +++ PPP
Sbjct: 58 GGGGGGGGYYYGGQQPPP 75
>02_05_0962 +
33114226-33114684,33114806-33114853,33115166-33115286,
33115760-33116008,33116149-33116302,33116493-33116985,
33117524-33117596,33118285-33118343
Length = 551
Score = 28.3 bits (60), Expect = 9.5
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +2
Query: 440 FXFPXXKXXXXGGXGGGGXFFFXXXPPPP 526
F + K GG GGGG PPPP
Sbjct: 43 FLWQSAKVSVGGGGGGGGFLRLRSAPPPP 71
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 28.3 bits (60), Expect = 9.5
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +2
Query: 413 PPXXPXPXFFXFPXXKXXXXGGXGGGGXFFFXXXPPPP 526
PP P P GG GGGG PPPP
Sbjct: 59 PPPVVTPTPQCPPPPSYPSGGGGGGGGGTVMYTSPPPP 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.149 0.543
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,637,677
Number of Sequences: 37544
Number of extensions: 298724
Number of successful extensions: 1452
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2741249160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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