Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_L04
(951 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.6
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 27 2.5
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 27 2.5
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.1 bits (67), Expect = 1.2
Identities = 27/92 (29%), Positives = 28/92 (30%), Gaps = 3/92 (3%)
Frame = -2
Query: 491 PPPPXPPXXXXXXXGXXXXXXXXXVGAPXXXXXXFLRGGDHPXXVX---FSPPPXXPPXK 321
PPPP PP G G P + GG P PPP PP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPG-GLPP------ISGGPPPPPPPPGGCPPPPPPPPPG 778
Query: 320 XXKXFXPPPRGXXXGXXXAPXXEPXXXPKKXP 225
K PPP AP PKK P
Sbjct: 779 GFKGGPPPPPPPGMFAPMAPVIPDYLPPKKVP 810
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.1 bits (67), Expect = 1.2
Identities = 27/92 (29%), Positives = 28/92 (30%), Gaps = 3/92 (3%)
Frame = -2
Query: 491 PPPPXPPXXXXXXXGXXXXXXXXXVGAPXXXXXXFLRGGDHPXXVX---FSPPPXXPPXK 321
PPPP PP G G P + GG P PPP PP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPG-GLPP------ISGGPPPPPPPPGGCPPPPPPPPPG 778
Query: 320 XXKXFXPPPRGXXXGXXXAPXXEPXXXPKKXP 225
K PPP AP PKK P
Sbjct: 779 GFKGGPPPPPPPGMFAPMAPVIPDYLPPKKVP 810
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.1 bits (67), Expect = 1.2
Identities = 27/92 (29%), Positives = 28/92 (30%), Gaps = 3/92 (3%)
Frame = -2
Query: 491 PPPPXPPXXXXXXXGXXXXXXXXXVGAPXXXXXXFLRGGDHPXXVX---FSPPPXXPPXK 321
PPPP PP G G P + GG P PPP PP
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPPG-GLPP------ISGGPPPPPPPPGGCPPPPPPPPPG 361
Query: 320 XXKXFXPPPRGXXXGXXXAPXXEPXXXPKKXP 225
K PPP AP PKK P
Sbjct: 362 GFKGGPPPPPPPGMFAPMAPVIPDYLPPKKVP 393
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.7 bits (66), Expect = 1.6
Identities = 23/74 (31%), Positives = 24/74 (32%), Gaps = 6/74 (8%)
Frame = -2
Query: 491 PPPPXPPXXXXXXXGXXXXXXXXXVGAPXXXXXXFLRGGDHPXXVXFSPPP------XXP 330
PPPP PP G G+P R G P SPPP P
Sbjct: 237 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPP-----RTGSPPPPPTGSPPPPPAGGSPPP 291
Query: 329 PXKXXKXFXPPPRG 288
P PPPRG
Sbjct: 292 PRAGSPPPPPPPRG 305
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.7 bits (66), Expect = 1.6
Identities = 23/74 (31%), Positives = 24/74 (32%), Gaps = 6/74 (8%)
Frame = -2
Query: 491 PPPPXPPXXXXXXXGXXXXXXXXXVGAPXXXXXXFLRGGDHPXXVXFSPPP------XXP 330
PPPP PP G G+P R G P SPPP P
Sbjct: 258 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPP-----RTGSPPPPPTGSPPPPPAGGSPPP 312
Query: 329 PXKXXKXFXPPPRG 288
P PPPRG
Sbjct: 313 PRAGSPPPPPPPRG 326
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.7 bits (66), Expect = 1.6
Identities = 23/74 (31%), Positives = 24/74 (32%), Gaps = 6/74 (8%)
Frame = -2
Query: 491 PPPPXPPXXXXXXXGXXXXXXXXXVGAPXXXXXXFLRGGDHPXXVXFSPPP------XXP 330
PPPP PP G G+P R G P SPPP P
Sbjct: 243 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPP-----RTGSPPPPPTGSPPPPPAGGSPPP 297
Query: 329 PXKXXKXFXPPPRG 288
P PPPRG
Sbjct: 298 PRAGSPPPPPPPRG 311
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 27.5 bits (58), Expect(2) = 2.5
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -1
Query: 525 GGGGXXXKKXXPPPPXPP 472
GGGG PPPP PP
Sbjct: 291 GGGGYSAPAAAPPPPPPP 308
Score = 21.0 bits (42), Expect(2) = 2.5
Identities = 9/27 (33%), Positives = 10/27 (37%)
Frame = -1
Query: 492 PPPPXPPXXXXXXXGXKKKXGXGXCGG 412
PPPP P G + G GG
Sbjct: 307 PPPPPPAPAPVSSGGGYSEQSSGGGGG 333
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 27.5 bits (58), Expect(2) = 2.5
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -1
Query: 525 GGGGXXXKKXXPPPPXPP 472
GGGG PPPP PP
Sbjct: 291 GGGGYSAPAAAPPPPPPP 308
Score = 21.0 bits (42), Expect(2) = 2.5
Identities = 9/27 (33%), Positives = 10/27 (37%)
Frame = -1
Query: 492 PPPPXPPXXXXXXXGXKKKXGXGXCGG 412
PPPP P G + G GG
Sbjct: 307 PPPPPPAPAPVSSGGGYSEQSSGGGGG 333
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.149 0.543
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,039,004
Number of Sequences: 27780
Number of extensions: 185205
Number of successful extensions: 676
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2465154230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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