Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_L03
         (847 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    32   0.59 
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    31   1.4  
U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81079-3|CAB03083.2|  588|Caenorhabditis elegans Hypothetical pr...    30   2.4  
U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical pr...    29   3.1  
DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determini...    29   3.1  
AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    29   3.1  
Z83222-1|CAB05712.1|  410|Caenorhabditis elegans Hypothetical pr...    28   9.6  

>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 326 SRSLPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKR 454
           S S PRR+    P ++    PR + RSP+ PR   +S + ++R
Sbjct: 88  SASPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRRRISRSPVRR 130



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
 Frame = +2

Query: 332 SLPRRKAHPL-------PGRKENPLPRESARSPTLPRLSNMSLTQLKRLSRYQFTYRNPT 490
           S P+RK  P+       P R+ +  PR+ +RSP      + S  + +R+S      R+P 
Sbjct: 75  SPPKRKREPIRAPSASPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRRRIS------RSPV 128

Query: 491 QSKRRCLTQYMSQSTDPSPSRYM-CXNLTPLKRK 589
           +  R    + +S+S  P P R     +  P KR+
Sbjct: 129 RRSRSPPRRQVSRSRSPPPRRQQRSRSPPPAKRR 162


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/64 (25%), Positives = 25/64 (39%)
 Frame = +3

Query: 357 PYPVEKKIPYPVKVHVPQPYPXCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQ 536
           P P  K +P P+  H P+P+P     P P          +    P  K   +P   P  +
Sbjct: 210 PMPFPKPMPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPKPKPKPMPKPKPKLK 269

Query: 537 TRPR 548
            +P+
Sbjct: 270 LKPK 273



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
 Frame = +3

Query: 357 PYPVEKKIPYPVKVHVPQPYPXCQTC--PLPS*RDCQGTSSRTATLPSRKEGALPSTCPS 530
           P+P     P P+  H P+P+P       P+P  +    +  ++   P+      P   P 
Sbjct: 58  PFPKPMLFPKPMPKHKPKPFPKPMLFPKPMPFPKPMPKSKPKSEPFPNPMPFPKPKPMPK 117

Query: 531 RQTRP 545
            + +P
Sbjct: 118 HKPKP 122


>U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical
           protein F35A5.5 protein.
          Length = 125

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 357 PYPVEKKIPYPVKVHVPQPYPXCQTCPLP 443
           P PV   +P PV V +P P P     P+P
Sbjct: 12  PVPVPAPVPQPVPVPMPMPMPMPMPMPVP 40



 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 354 IPYPVEKKIPYPVKVHVPQPYPXCQTCPLPS*RDC 458
           +P PV + +P P+ + +P P P     P+P   +C
Sbjct: 15  VPAPVPQPVPVPMPMPMPMPMPMPVPVPVPVQSNC 49



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 357 PYPVEKKIPYPVKVHVPQPYPXCQTCPLP 443
           P P+    P PV   VPQP P     P+P
Sbjct: 4   PIPIPIPAPVPVPAPVPQPVPVPMPMPMP 32



 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +3

Query: 354 IPYPVEKKIPYPVKVHVPQPYPXCQTCPLP 443
           IP PV    P P  V VP P P     P+P
Sbjct: 9   IPAPVPVPAPVPQPVPVPMPMPMPMPMPMP 38



 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 354 IPYPVEKKIPYPVKVHVPQPYPXCQTCPLP 443
           IP P+   +P P  V  P P P     P+P
Sbjct: 5   IPIPIPAPVPVPAPVPQPVPVPMPMPMPMP 34



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 354 IPYPVEKKIPYPVKVHVPQPYPXCQTCPLP 443
           IP P    +P PV   VP P P     P+P
Sbjct: 7   IPIPAPVPVPAPVPQPVPVPMPMPMPMPMP 36


>Z81079-3|CAB03083.2|  588|Caenorhabditis elegans Hypothetical
           protein F39H11.3 protein.
          Length = 588

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/65 (27%), Positives = 24/65 (36%)
 Frame = +3

Query: 363 PVEKKIPYPVKVHVPQPYPXCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQTR 542
           PV +  P P     PQ Y   Q  P+       G S      P +  GA+P   P     
Sbjct: 478 PVGRYAPMPPPYGAPQDYHPQQGPPMVQMMQQPGPSGYYPQRPGQPTGAVPGPGPQGYMN 537

Query: 543 PRQGI 557
           P+ G+
Sbjct: 538 PQMGM 542


>U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical
           protein F52C9.7 protein.
          Length = 451

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
 Frame = +2

Query: 341 RRKAHPLPGRKENPL--PRESARSP--TLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRRC 508
           +R+  P P R+  P   PR+ +RSP    PR    S  + ++LSR   + R  ++S RR 
Sbjct: 153 KRRRSPSPKRRRRPSEKPRKRSRSPRRERPRSPKRSREESRKLSRKPSSSR--SKSPRRS 210

Query: 509 LTQYMSQSTDPSPSR 553
                  +  PS SR
Sbjct: 211 REDPRKVARKPSRSR 225


>DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determining
           protein MOG-3 protein.
          Length = 451

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
 Frame = +2

Query: 341 RRKAHPLPGRKENPL--PRESARSP--TLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRRC 508
           +R+  P P R+  P   PR+ +RSP    PR    S  + ++LSR   + R  ++S RR 
Sbjct: 153 KRRRSPSPKRRRRPSEKPRKRSRSPRRERPRSPKRSREESRKLSRKPSSSR--SKSPRRS 210

Query: 509 LTQYMSQSTDPSPSR 553
                  +  PS SR
Sbjct: 211 REDPRKVARKPSRSR 225


>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 354 IPYPVEKKIPYPVKVHVPQPYP 419
           +P PV  ++P P++V VP P P
Sbjct: 156 VPVPVPVQVPVPIRVPVPVPVP 177


>Z83222-1|CAB05712.1|  410|Caenorhabditis elegans Hypothetical
           protein E01B7.1 protein.
          Length = 410

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 360 YPVEKKIPYPVKVHVPQPYPXCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPS 530
           YP+  +I YP  ++  +P P  QT P P+        +R +T+P       P   PS
Sbjct: 315 YPMISEIRYP-DLNTMRPEPTAQTPPAPAAPPAAPALNRQSTIPPVAMTQRPMIPPS 370


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,645,857
Number of Sequences: 27780
Number of extensions: 227888
Number of successful extensions: 894
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)