Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_L02
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    71   2e-13
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    33   0.049
SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme Rad31|Schiz...    33   0.065
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    29   0.80 
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc...    27   2.4  
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom...    27   2.4  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    27   4.3  

>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 34/51 (66%), Positives = 41/51 (80%)
 Frame = +2

Query: 224 EDEIDESLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVILGWCK 376
           ++ IDE LYSRQLYVLGH+AM++M+ S+VLI G  GLGVEIAKNV L   K
Sbjct: 12  QNTIDEGLYSRQLYVLGHEAMKQMSQSNVLIIGCKGLGVEIAKNVCLAGVK 62



 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 24/52 (46%), Positives = 31/52 (59%)
 Frame = +2

Query: 665 GLFSQVFCDFGPXFTVLDVNGENPXSXMIAAITQDYEAXVTCXDDTXXGLED 820
           GLF  +FCDFG  F   D +G  P + MIA+IT D    VT  ++T  GLE+
Sbjct: 157 GLFGSIFCDFGENFICTDTDGNEPLTGMIASITDD--GVVTMLEETRHGLEN 206



 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 22/58 (37%), Positives = 36/58 (62%)
 Frame = +1

Query: 487 QLSELNHYVPTTAYTGPLTEDFLRKFRVVVLTGASWAEQERVXAFTHANNIXLVIADT 660
           +L+ELN YVP +     L+ ++L+ F+ VV+T  S  +Q  +  FTH N+I  + AD+
Sbjct: 99  KLAELNQYVPVSV-VDELSTEYLKNFKCVVVTETSLTKQLEINDFTHKNHIAYIAADS 155



 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 21/40 (52%), Positives = 28/40 (70%)
 Frame = +3

Query: 351 KTLSLGGVKSVTLHDDKNCTVADLSSQFYLSETVIGQNRA 470
           K + L GVKSVTL+D +   + DLSSQ++L+E  IG  RA
Sbjct: 54  KNVCLAGVKSVTLYDPQPTRIEDLSSQYFLTEDDIGVPRA 93


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 33.1 bits (72), Expect = 0.049
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +2

Query: 278 DAMRRMASSDVLISGLGGLGVEIAKNVILGWCK 376
           +A+R   S+ VL+ G GG+G E+ KN+++   K
Sbjct: 18  EALRNFKSAKVLLVGAGGIGCELLKNLLMSGVK 50


>SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme
           Rad31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 32.7 bits (71), Expect = 0.065
 Identities = 21/55 (38%), Positives = 31/55 (56%)
 Frame = +2

Query: 200 MANNGARVEDEIDESLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVIL 364
           M N+    E EI  +LY RQ+ + G +A + +  S VL+     L  EIAKN++L
Sbjct: 1   MGNHNINAE-EI--ALYDRQIRLWGFNAQQALKQSRVLLITASPLANEIAKNLVL 52



 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 351 KTLSLGGVKSVTLHDDKNCTVADLSSQFYLSETVIGQNRA 470
           K L L G+  + + D       D+  QF++  + IGQ RA
Sbjct: 48  KNLVLSGIGKLCVLDSMTVYEKDVEEQFFIEASDIGQLRA 87


>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 206 NNGARVEDEIDESLYSRQLYVLGHDAMRRMASSDVLISGLGGLG 337
           + G   ++ +     +R     G D M R+ +S V++ G GG+G
Sbjct: 95  SKGVPYDENLIREQLARNYAFFGEDGMERLRNSFVIVVGCGGVG 138


>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
           L20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 142 VNGIIGDFSTRHRARTRTILPRILVALTIKKK 47
           V  +  D + RHRAR R+I  RIL  + ++KK
Sbjct: 102 VEAMYADMAARHRARFRSI--RILKVVEVEKK 131


>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
           protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 142 VNGIIGDFSTRHRARTRTILPRILVALTIKKK 47
           V  +  D + RHRAR R+I  RIL  + ++KK
Sbjct: 102 VEAMYADMAARHRARFRSI--RILKVVEVEKK 131


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 427 EERSATVQFLSSCKVTDFTP 368
           EE++    F S CKV DFTP
Sbjct: 87  EEKNMGSSFHSECKVDDFTP 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,202,474
Number of Sequences: 5004
Number of extensions: 62501
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)