Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_L02
(821 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p... 66 3e-11
Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p... 65 7e-11
Z72502-6|CAA96591.1| 343|Caenorhabditis elegans Hypothetical pr... 35 0.061
Z82096-6|CAD98732.2| 124|Caenorhabditis elegans Hypothetical pr... 32 0.43
U60979-2|AAC47278.1| 119|Caenorhabditis elegans CES-2 region pi... 32 0.43
U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membran... 32 0.43
U13875-1|AAA21162.2| 541|Caenorhabditis elegans Yeast ula (ubiq... 32 0.57
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass... 31 1.3
AF038618-6|AAB92067.2| 402|Caenorhabditis elegans Hypothetical ... 31 1.3
AF067616-2|AAC19188.2| 551|Caenorhabditis elegans Deubiquitylat... 30 1.7
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p... 29 3.0
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like... 29 3.0
AF047661-1|AAK71388.2| 915|Caenorhabditis elegans Hypothetical ... 29 5.3
Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr... 28 9.3
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr... 28 9.3
U41017-5|AAC48216.2| 495|Caenorhabditis elegans C.elegans homeo... 28 9.3
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ... 28 9.3
AJ427855-1|CAD20808.1| 495|Caenorhabditis elegans CEH-21 protei... 28 9.3
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei... 28 9.3
AF023470-1|AAB86814.1| 183|Caenorhabditis elegans CEH-21 protein. 28 9.3
>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
protein C47E12.5a protein.
Length = 1113
Score = 66.1 bits (154), Expect = 3e-11
Identities = 31/65 (47%), Positives = 44/65 (67%)
Frame = +2
Query: 173 GEAHSNNSAMANNGARVEDEIDESLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAK 352
GE ++ G ++ +D++LYSRQ+Y LG AM + ++ VLISGLG +GVEIAK
Sbjct: 83 GEKMDTSNNAGGVGGNSDELLDKNLYSRQIYTLGESAMVNLRTASVLISGLGSVGVEIAK 142
Query: 353 NVILG 367
N+ILG
Sbjct: 143 NLILG 147
Score = 50.8 bits (116), Expect = 1e-06
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Frame = +1
Query: 475 TSC-EQLSELNHYVPTTAYTGPLTEDFLRKFRVVVLTGASWAEQERVXAFTHANNIXLVI 651
TSC E+L+ELN V T LTE+F++ F +VVLT A+ Q ++ A+T A+N ++I
Sbjct: 182 TSCYERLAELNDSVNVQVSTDELTEEFVKTFDLVVLTDAARTAQRQIAAWTRAHNRRILI 241
Query: 652 AD 657
D
Sbjct: 242 TD 243
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/40 (52%), Positives = 28/40 (70%)
Frame = +3
Query: 351 KTLSLGGVKSVTLHDDKNCTVADLSSQFYLSETVIGQNRA 470
K L LGGV+ VT+HD K +DLS+Q+YL + +G NRA
Sbjct: 142 KNLILGGVRHVTIHDTKLAKWSDLSAQYYLRDADVGHNRA 181
Score = 33.9 bits (74), Expect = 0.14
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +2
Query: 665 GLFSQVFCDFGPXFTVLDVNGENPXSXMIAAITQDYEAXVTCXDDTXXGLED 820
G+FS +F DFG F + D GE I I + VT ++ GLED
Sbjct: 246 GVFSYIFNDFGDNFRIDDATGEQVREFFIEHIDKT-TGEVTTLENLFHGLED 296
>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
protein C47E12.5b protein.
Length = 1028
Score = 64.9 bits (151), Expect = 7e-11
Identities = 32/61 (52%), Positives = 44/61 (72%)
Frame = +2
Query: 185 SNNSAMANNGARVEDEIDESLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVIL 364
SNN+ G ++ +D++LYSRQ+Y LG AM + ++ VLISGLG +GVEIAKN+IL
Sbjct: 4 SNNAGGV--GGNSDELLDKNLYSRQIYTLGESAMVNLRTASVLISGLGSVGVEIAKNLIL 61
Query: 365 G 367
G
Sbjct: 62 G 62
Score = 50.8 bits (116), Expect = 1e-06
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Frame = +1
Query: 475 TSC-EQLSELNHYVPTTAYTGPLTEDFLRKFRVVVLTGASWAEQERVXAFTHANNIXLVI 651
TSC E+L+ELN V T LTE+F++ F +VVLT A+ Q ++ A+T A+N ++I
Sbjct: 97 TSCYERLAELNDSVNVQVSTDELTEEFVKTFDLVVLTDAARTAQRQIAAWTRAHNRRILI 156
Query: 652 AD 657
D
Sbjct: 157 TD 158
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/40 (52%), Positives = 28/40 (70%)
Frame = +3
Query: 351 KTLSLGGVKSVTLHDDKNCTVADLSSQFYLSETVIGQNRA 470
K L LGGV+ VT+HD K +DLS+Q+YL + +G NRA
Sbjct: 57 KNLILGGVRHVTIHDTKLAKWSDLSAQYYLRDADVGHNRA 96
Score = 33.9 bits (74), Expect = 0.14
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +2
Query: 665 GLFSQVFCDFGPXFTVLDVNGENPXSXMIAAITQDYEAXVTCXDDTXXGLED 820
G+FS +F DFG F + D GE I I + VT ++ GLED
Sbjct: 161 GVFSYIFNDFGDNFRIDDATGEQVREFFIEHIDKT-TGEVTTLENLFHGLED 211
>Z72502-6|CAA96591.1| 343|Caenorhabditis elegans Hypothetical
protein C08B6.9 protein.
Length = 343
Score = 35.1 bits (77), Expect = 0.061
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +2
Query: 236 DESLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVIL 364
++++Y RQ+ + G +A ++ +S VLI G LG E+AK + L
Sbjct: 7 EQAIYDRQIRLWGMEAQNKIRNSKVLIIGGKQLGAEVAKTLSL 49
>Z82096-6|CAD98732.2| 124|Caenorhabditis elegans Hypothetical
protein ZK909.6 protein.
Length = 124
Score = 32.3 bits (70), Expect = 0.43
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 86 NCARSCPMS-SAEVADNSVDPPAKKRKLNTGEAHSNNSAMANNGARVEDEIDESLY 250
N +SC +AE ++ PP+ L T A S N NG V+D ++ +Y
Sbjct: 63 NIRKSCVQKQNAEKSEEETSPPSSDADLPTSLADSFNDTTPYNGTIVDDRMEVKIY 118
>U60979-2|AAC47278.1| 119|Caenorhabditis elegans CES-2 region
pioneer protein.
Length = 119
Score = 32.3 bits (70), Expect = 0.43
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 86 NCARSCPMS-SAEVADNSVDPPAKKRKLNTGEAHSNNSAMANNGARVEDEIDESLY 250
N +SC +AE ++ PP+ L T A S N NG V+D ++ +Y
Sbjct: 58 NIRKSCVQKQNAEKSEEETSPPSSDADLPTSLADSFNDTTPYNGTIVDDRMEVKIY 113
>U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membrane
ruffles in embryoprotein 1 protein.
Length = 430
Score = 32.3 bits (70), Expect = 0.43
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 239 ESLYSRQLYVLGHDAMRRMASSDVLISGLGGLGVEIAKNVIL 364
+S Y +V G + + ++ +L+ G GGLG E+ KN+ L
Sbjct: 22 DSAYKVPWFVPGPENFEALQNTKILVIGAGGLGCELLKNLAL 63
>U13875-1|AAA21162.2| 541|Caenorhabditis elegans Yeast ula
(ubiquitin activating)homolog protein 1 protein.
Length = 541
Score = 31.9 bits (69), Expect = 0.57
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 351 KTLSLGGVKSVTLHDDKNCTVADLSSQFYLSETVIGQNRA 470
K+L L GV+S + DD AD+ F+L IG++RA
Sbjct: 44 KSLVLAGVQSFYVVDDAKVEQADIGQNFFLHADDIGRSRA 83
>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily
assigned gene nameprotein 162 protein.
Length = 2643
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 138 LTPRRKSGN*IQEKRIRTTRQWRTMERAWKMKSTRVCTRA 257
+TP+RK GN + +I +R E AWK K +C A
Sbjct: 517 VTPQRKQGN--ENIQILEVLHFRRNEHAWKNKGKNICKAA 554
>AF038618-6|AAB92067.2| 402|Caenorhabditis elegans Hypothetical
protein F42G8.6 protein.
Length = 402
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 236 DESLYSRQLYV--LGHDAMRRMASSDVLISGLGGLGVEIA 349
D YSRQL V G + + + +VLI G GGLG +A
Sbjct: 14 DAGRYSRQLLVDDFGVSGQKNLKNLNVLIVGAGGLGCPVA 53
>AF067616-2|AAC19188.2| 551|Caenorhabditis elegans Deubiquitylating
with usp/ubp andotu domains protein 2 protein.
Length = 551
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/61 (34%), Positives = 33/61 (54%)
Frame = +2
Query: 146 PAKKRKLNTGEAHSNNSAMANNGARVEDEIDESLYSRQLYVLGHDAMRRMASSDVLISGL 325
P + +LN +AHSNNS + + GA E+ + E + +R+ L D MA D + G+
Sbjct: 237 PVECSELNKNDAHSNNSRL-HIGAD-EEVVQEDVTARK--QLFFDVFSNMADFDNTLVGM 292
Query: 326 G 328
G
Sbjct: 293 G 293
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
F15B9.7 protein.
Length = 2577
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = -3
Query: 723 FTSNTVNXG---PKSQNTCENRPXSISNDQXYVIGVSERXYSLLLSPRCS-CED 574
F S+ ++ G PK N + RP + V G ++ YS++ PRC+ CE+
Sbjct: 2072 FASDKLDFGNILPKFNNFVDLRPTGFPRVRAIVTGTTQVVYSIVPYPRCNRCEN 2125
>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = -3
Query: 723 FTSNTVNXG---PKSQNTCENRPXSISNDQXYVIGVSERXYSLLLSPRCS-CED 574
F S+ ++ G PK N + RP + V G ++ YS++ PRC+ CE+
Sbjct: 2072 FASDKLDFGNILPKFNNFVDLRPTGFPRVRAIVTGTTQVVYSIVPYPRCNRCEN 2125
>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
protein FMI-1 protein.
Length = 2596
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = -3
Query: 723 FTSNTVNXG---PKSQNTCENRPXSISNDQXYVIGVSERXYSLLLSPRCS-CED 574
F S+ ++ G PK N + RP + V G ++ YS++ PRC+ CE+
Sbjct: 2091 FASDKLDFGNILPKFNNFVDLRPTGFPRVRAIVTGTTQVVYSIVPYPRCNRCEN 2144
>AF047661-1|AAK71388.2| 915|Caenorhabditis elegans Hypothetical
protein M70.3a protein.
Length = 915
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = -1
Query: 251 STDSRRFHLPRALHCSPLPSCSNALLLYLVSAFSPGGQRNYRRLQH*TSGTNAHNFAKN 75
S+ S F S + SNA + + S SP Q + H T +NAHN ++
Sbjct: 20 SSGSAPFKQSETAKTSDFTAFSNAHNIIIASGSSPSKQSETAKTSHFTDFSNAHNVIRD 78
>Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical
protein W02A11.4 protein.
Length = 582
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 290 RMASSDVLISGLGGLGVEIAKNV-ILGWCKV 379
++ S +L+ G GG+G E+ KN+ + G+ KV
Sbjct: 10 KIVQSKILVIGAGGIGCELLKNLAVTGFRKV 40
>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 145 PGEKAETKYRRSAFEQLGNGEQW 213
PG KAE+K+R+ F + NG +W
Sbjct: 1141 PGNKAESKFRQ--FNKFENGNEW 1161
>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 145 PGEKAETKYRRSAFEQLGNGEQW 213
PG KAE+K+R+ F + NG +W
Sbjct: 1141 PGNKAESKFRQ--FNKFENGNEW 1161
>U41017-5|AAC48216.2| 495|Caenorhabditis elegans C.elegans homeobox
protein 21 protein.
Length = 495
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 155 KRKLNTGEAHSNNSAMANNGARVEDEIDE 241
+R+L + S +S NGA EDE+DE
Sbjct: 443 RRRLRIDQQISRSSRSTGNGADTEDELDE 471
>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 145 PGEKAETKYRRSAFEQLGNGEQW 213
PG KAE+K+R+ F + NG +W
Sbjct: 1141 PGNKAESKFRQ--FNKFENGNEW 1161
>AJ427855-1|CAD20808.1| 495|Caenorhabditis elegans CEH-21 protein
protein.
Length = 495
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 155 KRKLNTGEAHSNNSAMANNGARVEDEIDE 241
+R+L + S +S NGA EDE+DE
Sbjct: 443 RRRLRIDQQISRSSRSTGNGADTEDELDE 471
>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
protein.
Length = 2920
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 145 PGEKAETKYRRSAFEQLGNGEQW 213
PG KAE+K+R+ F + NG +W
Sbjct: 1141 PGNKAESKFRQ--FNKFENGNEW 1161
>AF023470-1|AAB86814.1| 183|Caenorhabditis elegans CEH-21 protein.
Length = 183
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 155 KRKLNTGEAHSNNSAMANNGARVEDEIDE 241
+R+L + S +S NGA EDE+DE
Sbjct: 131 RRRLRIDQQISRSSRSTGNGADTEDELDE 159
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,186,931
Number of Sequences: 27780
Number of extensions: 373482
Number of successful extensions: 1025
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -