Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_L01
         (852 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0799 - 19805190-19805749,19806316-19806403                       29   3.6  
04_04_0859 + 28805836-28805842,28806405-28806492,28807474-288075...    29   6.2  
06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699...    28   8.2  

>04_03_0799 - 19805190-19805749,19806316-19806403
          Length = 215

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 361 PVEKKIPYPVKVHVPQPYPXCQTCPLPS*RDC 456
           PV K +P+PV    P P P C  CP PS   C
Sbjct: 94  PVCKLVPFPVPYPAPPPPPAC--CP-PSTHQC 122


>04_04_0859 +
           28805836-28805842,28806405-28806492,28807474-28807558,
           28807638-28807763,28807819-28807968,28808497-28808541,
           28808612-28808875,28809843-28809887,28810395-28810430,
           28812048-28812816,28813063-28813925,28814024-28814182,
           28814440-28814558,28815356-28815417,28816677-28816805,
           28817395-28817460,28817757-28817890,28818025-28818162,
           28818630-28818889,28818996-28819107,28819590-28819675,
           28820655-28820735,28822841-28822928,28823222-28823260,
           28823847-28823964,28824063-28824130,28824884-28824981,
           28825238-28825397,28825691-28825816,28825876-28825945,
           28826046-28826449
          Length = 1664

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +1

Query: 391 KVHVPQPYPXCQTCPLPS*RDCQGTSSRTATL 486
           K+ +P   P C TC   S RDC G    T  L
Sbjct: 78  KLGLPNGAPQCATCGSRSIRDCDGKKKLTGKL 109


>06_01_0906 +
           6990892-6991615,6992480-6992679,6992822-6993002,
           6993855-6994046,6994492-6994724,6995537-6995638,
           6995776-6995826,6996234-6996338,6997287-6997353,
           6997946-6997962
          Length = 623

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 321 SSRSLPRRKAHPLPGRKENPLPRESARSPTLPRLSN 428
           +S S P+RK    PGRK  P P  S  +   P   N
Sbjct: 7   ASTSSPKRKPGRRPGRKPKPPPAPSPAAAPAPAAEN 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,350,994
Number of Sequences: 37544
Number of extensions: 218688
Number of successful extensions: 822
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)