Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_L01
(852 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 32 0.60
U46675-2|AAB52644.1| 125|Caenorhabditis elegans Hypothetical pr... 30 1.8
U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical pr... 29 3.2
DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determini... 29 3.2
AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical... 29 3.2
Z81079-3|CAB03083.2| 588|Caenorhabditis elegans Hypothetical pr... 29 4.2
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 29 4.2
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 31.9 bits (69), Expect = 0.60
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 324 SRSLPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKR 452
S S PRR+ P ++ PR + RSP+ PR +S + ++R
Sbjct: 88 SASPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRRRISRSPVRR 130
>U46675-2|AAB52644.1| 125|Caenorhabditis elegans Hypothetical
protein F35A5.5 protein.
Length = 125
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 355 PYPVEKKIPYPVKVHVPQPYPXCQTCPLP 441
P PV +P PV V +P P P P+P
Sbjct: 12 PVPVPAPVPQPVPVPMPMPMPMPMPMPVP 40
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 352 IPYPVEKKIPYPVKVHVPQPYPXCQTCPLPS*RDC 456
+P PV + +P P+ + +P P P P+P +C
Sbjct: 15 VPAPVPQPVPVPMPMPMPMPMPMPVPVPVPVQSNC 49
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 355 PYPVEKKIPYPVKVHVPQPYPXCQTCPLP 441
P P+ P PV VPQP P P+P
Sbjct: 4 PIPIPIPAPVPVPAPVPQPVPVPMPMPMP 32
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +1
Query: 352 IPYPVEKKIPYPVKVHVPQPYPXCQTCPLP 441
IP PV P P V VP P P P+P
Sbjct: 9 IPAPVPVPAPVPQPVPVPMPMPMPMPMPMP 38
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1
Query: 352 IPYPVEKKIPYPVKVHVPQPYPXCQTCPLP 441
IP P+ +P P V P P P P+P
Sbjct: 5 IPIPIPAPVPVPAPVPQPVPVPMPMPMPMP 34
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +1
Query: 352 IPYPVEKKIPYPVKVHVPQPYPXCQTCPLP 441
IP P +P PV VP P P P+P
Sbjct: 7 IPIPAPVPVPAPVPQPVPVPMPMPMPMPMP 36
>U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical
protein F52C9.7 protein.
Length = 451
Score = 29.5 bits (63), Expect = 3.2
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Frame = +3
Query: 339 RRKAHPLPGRKENPL--PRESARSP--TLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRRC 506
+R+ P P R+ P PR+ +RSP PR S + ++LSR + R ++S RR
Sbjct: 153 KRRRSPSPKRRRRPSEKPRKRSRSPRRERPRSPKRSREESRKLSRKPSSSR--SKSPRRS 210
Query: 507 LTXYMSXSTXPSPSR 551
+ PS SR
Sbjct: 211 REDPRKVARKPSRSR 225
>DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determining
protein MOG-3 protein.
Length = 451
Score = 29.5 bits (63), Expect = 3.2
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Frame = +3
Query: 339 RRKAHPLPGRKENPL--PRESARSP--TLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRRC 506
+R+ P P R+ P PR+ +RSP PR S + ++LSR + R ++S RR
Sbjct: 153 KRRRSPSPKRRRRPSEKPRKRSRSPRRERPRSPKRSREESRKLSRKPSSSR--SKSPRRS 210
Query: 507 LTXYMSXSTXPSPSR 551
+ PS SR
Sbjct: 211 REDPRKVARKPSRSR 225
>AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical
protein F41E6.11 protein.
Length = 316
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 352 IPYPVEKKIPYPVKVHVPQPYP 417
+P PV ++P P++V VP P P
Sbjct: 156 VPVPVPVQVPVPIRVPVPVPVP 177
>Z81079-3|CAB03083.2| 588|Caenorhabditis elegans Hypothetical
protein F39H11.3 protein.
Length = 588
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/65 (27%), Positives = 24/65 (36%)
Frame = +1
Query: 361 PVEKKIPYPVKVHVPQPYPXCQTCPLPS*RDCQGTSSRTATLPSRKEGALPXTCPXRXTR 540
PV + P P PQ Y Q P+ G S P + GA+P P
Sbjct: 478 PVGRYAPMPPPYGAPQDYHPQQGPPMVQMMQQPGPSGYYPQRPGQPTGAVPGPGPQGYMN 537
Query: 541 PRQGI 555
P+ G+
Sbjct: 538 PQMGM 542
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 355 PYPVEKKIPYPVKVHVPQPYPXCQTCPLP 441
P P K +P P+ H P+P+P P P
Sbjct: 210 PMPFPKPMPKPMPKHKPKPFPKPMLFPKP 238
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,654,741
Number of Sequences: 27780
Number of extensions: 160796
Number of successful extensions: 633
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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