Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_K24
(854 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|... 89 6e-19
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe... 48 1e-06
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M... 28 1.9
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 27 2.6
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 27 4.5
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 27 4.5
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 26 5.9
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 26 5.9
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 26 5.9
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces... 26 5.9
>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 342
Score = 89.4 bits (212), Expect = 6e-19
Identities = 55/196 (28%), Positives = 92/196 (46%), Gaps = 2/196 (1%)
Frame = +2
Query: 35 KWYFTKEQLQNSPSRKCGLDADKELAYRQQAANLIQDMGQRLQVSQLCINTAIVYMHRFY 214
+W +K+QL +PS G+ D+E R + N I ++G RL++ Q + TA +Y HRFY
Sbjct: 17 QWIISKDQLVFTPSALDGIPLDQEEIQRSKGCNFIINVGLRLKLPQTALATANIYFHRFY 76
Query: 215 AFHSFTQFHRNXXXXXXXXXXXKVEEQPRKL-EYVIKVAHVCLHRGEGVNALTPEQYQEQ 391
S +H KVE+ RKL + VI A V + ++Y
Sbjct: 77 LRFSLKNYHYYEVAATCIFLATKVEDSVRKLRDIVINCAKVAQKNSNVLVDEQTKEYWRW 136
Query: 392 AQDLVFNENVLLQTLGFDVAIDHPHTHVVRTC-HLVKATKDLAQTSYFMASNSLHLTTMC 568
+++ E VLL+ L FD ++HP+ +V+ V K++ + ++ ++S + C
Sbjct: 137 RDVILYTEEVLLEALCFDFTVEHPYPYVLSFIKKFVADDKNVTKVAWTYINDSTR-SIAC 195
Query: 569 LQYKPTVVACFCIHLA 616
L Y P +A A
Sbjct: 196 LLYSPKTIAAAAFQFA 211
>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 48.4 bits (110), Expect = 1e-06
Identities = 55/241 (22%), Positives = 99/241 (41%), Gaps = 17/241 (7%)
Frame = +2
Query: 53 EQLQNSPSRKCGLDADKELAYRQQAANL----IQDMGQRLQVSQLCINTAIVYMHRFYAF 220
+ L +S + L+A Y ++ L IQ+ G L ++Q C+ ++ R+
Sbjct: 3 DSLVHSLASSSQLEAFDSFEYAEELCTLGSEWIQEAGVLLNLTQNCVIVCLILFRRYCTL 62
Query: 221 HSFTQFHRNXXXXXXXXXXXKVEEQPRKLEYVIKVAHVCLHRGEGVNA-----LTPEQYQ 385
+ + K E P ++ + V R + N + + Y
Sbjct: 63 YPPRVPDLDAIVMACVSIGSKTTETPASVQDICNVVVYLKERFKDTNFEARGFIAHDLYS 122
Query: 386 EQ---AQDLVFN-ENVLLQTLGFDVAIDHPHT---HVVRTCHLVKATKDLAQTSYFMASN 544
E+ +++ + N E +L+ L FD I PH H ++T L+ K L T F+ N
Sbjct: 123 EEMYSSRNRLSNMELEVLRALNFDTHIVIPHKLAIHYLQTLQLIDNKKLLQITWNFL--N 180
Query: 545 SLHLTTMCLQYKPTVVACFCIHLASKWSNWVIPQSYEGRHWFSYVDKT-VTMELLEKLLE 721
T +C+ Y P +AC CI +A++ +P + W+ D T ++ L +LE
Sbjct: 181 DASRTRLCVLYPPFSLACGCIAMAARVIGMKLP-----KDWYRVFDTTKEEIDSLTSILE 235
Query: 722 N 724
N
Sbjct: 236 N 236
>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 535
Score = 27.9 bits (59), Expect = 1.9
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +1
Query: 22 WWARKMVFYKRTATEFTKQKMRFRCR*RVSLSAAGRESNTGYGTEASSLSTMYQHGDSVH 201
+WA+ RTA FT+ + +R R RV+ A + +T ASSLS+ + S H
Sbjct: 459 FWAQPAKTQFRTA--FTRSR-EWRRRYRVAPPAENEKPHTSRTNTASSLSSTSEDQVSTH 515
Query: 202 ASV 210
S+
Sbjct: 516 GSI 518
>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 959
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 320 KVAHVCLHRGEGVNALTPEQYQEQ 391
KVAH CL E + LTP+++ ++
Sbjct: 893 KVAHACLVSPEAMKKLTPQEWSQK 916
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 148 GTEASSLSTMYQHGDSVHASVL 213
G E SSLS + H +++HA +L
Sbjct: 432 GPEYSSLSAILDHSNNIHAEIL 453
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 663 WRPSYDCGITQLLHLEA 613
WR SYD GI LLH+++
Sbjct: 137 WRISYDAGIGFLLHMQS 153
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 8 SVQWLGGQEKWYFTKEQLQNSPSRKCGLDADK 103
+V + G W FT Q N ++K G+D +K
Sbjct: 208 TVAFASGLHGWAFTVRQFANRYAKKFGIDRNK 239
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 8 SVQWLGGQEKWYFTKEQLQNSPSRKCGLDADK 103
+V + G W FT Q N ++K G+D +K
Sbjct: 208 TVAFASGLHGWAFTVRQFANRYAKKFGIDRNK 239
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +1
Query: 106 VSLSAAGRESNTGYGTEASSLSTMYQHGDSVHASVLRL 219
++++ G +SNTG G E + S +GD++ +++ ++
Sbjct: 963 IAMNRLGGKSNTGEGGEDPARSQRLANGDTMRSAIKQI 1000
>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 136 NTGYGTEASSLSTMYQHGDSVHASVLRLPFVHTVS 240
++GY E + +++ D + ASVL +P V +S
Sbjct: 485 DSGYNMEKGFFAQSFENNDILDASVLVMPLVSFIS 519
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,683,291
Number of Sequences: 5004
Number of extensions: 78782
Number of successful extensions: 199
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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