Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_K24
(854 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0362 + 17998110-17998345,17998877-17998958,18000309-180003... 77 3e-28
11_01_0357 + 2715271-2715509,2716200-2716281,2717117-2717251,271... 121 8e-28
02_03_0032 + 14112354-14112417,14112471-14112549,14114435-141145... 105 6e-23
02_01_0262 - 1734447-1735090,1735219-1735367,1735458-1735633,173... 101 1e-21
01_04_0064 - 15600467-15600528,15600606-15600647,15600732-156011... 78 8e-15
01_07_0118 + 41176159-41178909 30 2.0
02_04_0552 - 23804154-23805326 28 8.3
>12_02_0362 +
17998110-17998345,17998877-17998958,18000309-18000392,
18000600-18000734,18001395-18001570,18001654-18001805,
18003730-18004575,18004961-18005301
Length = 683
Score = 76.6 bits (180), Expect(2) = 3e-28
Identities = 47/140 (33%), Positives = 77/140 (55%), Gaps = 4/140 (2%)
Frame = +2
Query: 281 KVEEQPRKLEYVIKVAHVCLHRGE---GVNALTPEQYQEQAQDLVFNENVLLQTLGFDVA 451
KVEE PR L+ VI V++ +H+ + G E Y +Q + ++ E V+L TLGFD+
Sbjct: 146 KVEETPRPLKDVILVSYEIIHKKDPAAGQRIKQKEVYDQQKELILLAERVVLATLGFDLN 205
Query: 452 IDHPHTHVVRTCHLVKATKD-LAQTSYFMASNSLHLTTMCLQYKPTVVACFCIHLASKWS 628
+ HP+ +V K ++ LAQ ++ ++ L T++CLQ+KP +A I LA+K+
Sbjct: 206 VHHPYKPLVEAIRKFKVAQNALAQVAWNFVNDGLR-TSLCLQFKPHHIAAGAIFLAAKFL 264
Query: 629 NWVIPQSYEGRHWFSYVDKT 688
+P E + W+ D T
Sbjct: 265 KVKLPSDGE-KVWWQEFDVT 283
Score = 66.9 bits (156), Expect(2) = 3e-28
Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Frame = +2
Query: 38 WYFTKEQLQ-NSPSRKCGLDADKELAYRQQAANLIQDMGQRLQVSQLCINTAIVYMHRFY 214
WYF++++++ NSPSR+ G+D KE R+ +QD+G RL+V Q+ I TAIV+ HRFY
Sbjct: 36 WYFSRKEIEENSPSRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFY 95
Query: 215 AFHSFTQFHR 244
S + R
Sbjct: 96 LRQSHAKNDR 105
>11_01_0357 +
2715271-2715509,2716200-2716281,2717117-2717251,
2717428-2717457,2717486-2717661,2717743-2717894,
2718395-2719083
Length = 500
Score = 121 bits (291), Expect = 8e-28
Identities = 77/239 (32%), Positives = 126/239 (52%), Gaps = 17/239 (7%)
Frame = +2
Query: 23 GGQ--EKWYFTKEQLQ-NSPSRKCGLDADKELAYRQQAANLIQDMGQRLQVSQLCINTAI 193
GGQ WYF++++++ NS SR+ G+D KE R+ +QD+G RL+V Q+ I TAI
Sbjct: 30 GGQLGASWYFSRKEIEENSLSRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAI 89
Query: 194 VYMHRFYAFHSFTQFHRNXXXXXXXXXXXKVEEQPRKLEYVIKVAHVCLHRGEGVNALTP 373
V+ HRF+ S + R KVEE PR L+ VI +++ +H+ +
Sbjct: 90 VFCHRFFLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVILISYEIIHKKDAAAVQRI 149
Query: 374 EQ-------------YQEQAQDLVFNENVLLQTLGFDVAIDHPHTHVVRTCHLVKATKD- 511
+Q Y++Q + ++ E V+L TLGFD+ + HP+ +V K ++
Sbjct: 150 KQKSLDYFGVEWQEVYEQQKELILLGERVVLVTLGFDLNVHHPYKPLVEAIKKFKVAQNA 209
Query: 512 LAQTSYFMASNSLHLTTMCLQYKPTVVACFCIHLASKWSNWVIPQSYEGRHWFSYVDKT 688
LAQ ++ ++ L T++CLQ+KP +A I LA+K+ +P E + W+ D T
Sbjct: 210 LAQVAWNFVNDGLR-TSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGE-KVWWQEFDVT 266
>02_03_0032 +
14112354-14112417,14112471-14112549,14114435-14114551,
14114721-14114802,14115734-14115868,14115948-14116123,
14116219-14116370,14116433-14117622
Length = 664
Score = 105 bits (251), Expect = 6e-23
Identities = 68/215 (31%), Positives = 115/215 (53%), Gaps = 5/215 (2%)
Frame = +2
Query: 53 EQLQN-SPSRKCGLDADKELAYRQQAANLIQDMGQRLQVSQLCINTAIVYMHRFYAFHSF 229
E+L+ SPSRK G+ E RQ + I+D+G RL++ Q+ I TAI++ HRFY + S
Sbjct: 49 EELEKFSPSRKDGITEIMESEIRQLYCSFIRDVGIRLKLPQMTIATAIMFCHRFYLYQSL 108
Query: 230 TQFHRNXXXXXXXXXXXKVEEQPRKLEYVIKVAHVCLHRGEGVNALTPEQ---YQEQAQD 400
+ KVE+ P L+ VI+VA+ ++R + A Q +++Q
Sbjct: 109 AKNGWQTIATVCIFLASKVEDTPCPLDQVIRVAYGTMYRRDPATARRIHQKDVFEKQKAL 168
Query: 401 LVFNENVLLQTLGFDVAIDHPHTHVVRTCH-LVKATKDLAQTSYFMASNSLHLTTMCLQY 577
++ E ++L T+ FD I HP+ ++ L + K++ Q ++ ++ L TT+CLQY
Sbjct: 169 ILTGERLVLTTVRFDFNIQHPYRPLLDAMEKLGISQKEVKQVAWNFVNDWLK-TTLCLQY 227
Query: 578 KPTVVACFCIHLASKWSNWVIPQSYEGRHWFSYVD 682
KP +A ++LA+K+ N +P + G W+ D
Sbjct: 228 KPQYIAAGSLYLAAKFQNVKLP-VHGGHVWWHQFD 261
>02_01_0262 -
1734447-1735090,1735219-1735367,1735458-1735633,
1735719-1735853,1737039-1737120,1737307-1737461
Length = 446
Score = 101 bits (241), Expect = 1e-21
Identities = 64/225 (28%), Positives = 120/225 (53%), Gaps = 5/225 (2%)
Frame = +2
Query: 23 GGQEKWYFTKEQLQN-SPSRKCGLDADKELAYRQQAANLIQDMGQRLQVSQLCINTAIVY 199
G WY T+++++ SPSR+ G+ A KE R + I+D+G RLQ+ Q+ I TA +
Sbjct: 4 GAAGSWYVTRDEVERGSPSRRDGVGAAKEAELRATYCSFIRDVGLRLQLPQVTIATATLL 63
Query: 200 MHRFYAFHSFTQFHRNXXXXXXXXXXXKVEEQPRKLEYVIKVAHVCLHRGE--GVNALTP 373
HRFY S + K+E+ P L+ VI VA+ ++R + + +
Sbjct: 64 CHRFYLRQSHAKNEWQTVATVCVFLASKIEDTPCPLQRVIIVAYETMYRKDCNAAHRIYQ 123
Query: 374 EQYQEQAQDLVF-NENVLLQTLGFDVAIDHPHTHV-VRTCHLVKATKDLAQTSYFMASNS 547
++ E+ ++L+ E +LL T+ FD I HP+ + + L ++ Q + + +++
Sbjct: 124 KEVLEKQKELILVGETLLLSTIRFDFNIQHPYEPLKLALKKLGIFQMEVKQVAVNLINDA 183
Query: 548 LHLTTMCLQYKPTVVACFCIHLASKWSNWVIPQSYEGRHWFSYVD 682
+ TT+ +Q+KP +A ++LA+K++N+ +P +G+ W+ D
Sbjct: 184 IR-TTLVVQFKPHYIAAGSLYLAAKFNNFRLPS--DGKVWWHEFD 225
>01_04_0064 -
15600467-15600528,15600606-15600647,15600732-15601107,
15601186-15601447,15602992-15603158,15603344-15603484,
15603575-15603643
Length = 372
Score = 78.2 bits (184), Expect = 8e-15
Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 4/158 (2%)
Frame = +2
Query: 185 TAIVYMHRFYAFHSFTQFHRNXXXXXXXXXXXKVEEQPRKLEYVIKVAHVCLHRGEGVNA 364
TA V HRFY SF +F K+EE PR+ +++I V H R E V
Sbjct: 3 TAQVLFHRFYCKKSFVRFSVKRVAASCVWLAGKLEESPRRSKHIIIVFHRMECRRENVPI 62
Query: 365 ----LTPEQYQEQAQDLVFNENVLLQTLGFDVAIDHPHTHVVRTCHLVKATKDLAQTSYF 532
+ ++Y + DLV E LL+ +GF ++HPH + ++A +L Q ++
Sbjct: 63 EHLDVFSKKYSDLKHDLVRTERHLLKEMGFICHVEHPHKFISNYLATLEA-PELTQEAWN 121
Query: 533 MASNSLHLTTMCLQYKPTVVACFCIHLASKWSNWVIPQ 646
+A++SL TT+C+++K VVAC ++ A++ +P+
Sbjct: 122 LANDSLR-TTLCVRFKSEVVACGVVYAAARRHGVPLPE 158
>01_07_0118 + 41176159-41178909
Length = 916
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 160 SSLSTMYQHGDSVHASVLRLPFVHTVSQECHSCSSF 267
S L ++ G+SVH+SV++L + T S +S +F
Sbjct: 276 SHLKDLFSFGESVHSSVIKLGYEDTTSSVANSLITF 311
>02_04_0552 - 23804154-23805326
Length = 390
Score = 28.3 bits (60), Expect = 8.3
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +2
Query: 392 AQDLVFNENVLLQTLGFDVAIDHPHTHVVRTCHLVKATKDLA--QTSYFMASNSLHLTTM 565
AQ+++ E ++ LG+ + + T V K ++L + + +A SL +
Sbjct: 277 AQEVLAMEREMMAALGYRLGGPNAETFVEHFTRYSKGKEELRVQRLARHIADRSLE-SYG 335
Query: 566 CLQYKPTVVACFCIHLASKWS 628
CL Y P+VVA I +A +W+
Sbjct: 336 CLGYLPSVVAAAVISIA-RWT 355
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,354,697
Number of Sequences: 37544
Number of extensions: 560513
Number of successful extensions: 1407
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1399
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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