Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_K24
(854 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L23648-3|AAN63386.1| 438|Caenorhabditis elegans Cyclin t protei... 105 5e-23
L23648-1|AAA28034.1| 468|Caenorhabditis elegans Cyclin t protei... 105 5e-23
Z78012-6|CAB01416.1| 480|Caenorhabditis elegans Hypothetical pr... 87 2e-17
AY557405-1|AAS64750.1| 480|Caenorhabditis elegans cyclin L prot... 87 2e-17
L23648-4|AAA28033.2| 555|Caenorhabditis elegans Cyclin t protei... 85 5e-17
Z83226-1|CAB05724.2| 252|Caenorhabditis elegans Hypothetical pr... 84 1e-16
L23648-5|AAN63385.1| 381|Caenorhabditis elegans Cyclin t protei... 40 0.002
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr... 29 3.2
AB009362-1|BAA23766.1| 118|Caenorhabditis elegans protein ( Cae... 29 3.2
U41993-8|AAA83449.1| 497|Caenorhabditis elegans Temporarily ass... 29 5.6
U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily ass... 29 5.6
Z92829-5|CAB07345.1| 324|Caenorhabditis elegans Hypothetical pr... 28 9.7
U64853-3|AAB04976.1| 565|Caenorhabditis elegans Hypothetical pr... 28 9.7
>L23648-3|AAN63386.1| 438|Caenorhabditis elegans Cyclin t protein
1.1, isoform b protein.
Length = 438
Score = 105 bits (251), Expect = 5e-23
Identities = 70/243 (28%), Positives = 121/243 (49%), Gaps = 16/243 (6%)
Frame = +2
Query: 35 KWYFTKEQLQNSPSRKCGLDADKELAYRQQAANLIQDM--------GQRLQVSQLCINTA 190
KW FTKE+++ + S + G+ ++ELA RQ AA IQ+M ++++ + A
Sbjct: 19 KWLFTKEEMKKTASIQEGMSREEELASRQMAAAFIQEMIDGLNNVKDPKMKIGHTGLCVA 78
Query: 191 IVYMHRFYAFHSFTQFHRNXXXXXXXXXXXKVEEQPRKLEYVIKVAHVCLHRGEGVNALT 370
+MHRFY HSF ++ K +E PRKL +VI V R + T
Sbjct: 79 HTHMHRFYYLHSFKKYDYRDVGAACVFLAGKSQECPRKLSHVISVWR---ERKDRKQLTT 135
Query: 371 PEQYQEQAQDLVFNENVLLQTLGFDVAIDHPHTHVVRTCHLV---KATKDLAQTSYFMAS 541
E AQ +V E+++LQT+ FD+ + PH +V+ V + + L +Y+ A+
Sbjct: 136 ETARNEAAQIIVLLESMILQTIAFDLNVHLPHIYVLDIMKKVDKKEHYRPLTSCAYYFAT 195
Query: 542 NSLHLTTMCLQYKPTVVACFCIHLASKWSNWVIPQSY-----EGRHWFSYVDKTVTMELL 706
+ + +T L+Y ++ IHL + ++N I + + E W++ D+T+T E L
Sbjct: 196 DVIAVTDWSLRYSAASMSIVIIHLMAAYANVRIERLFADFINEDSPWYAKFDETMTNEKL 255
Query: 707 EKL 715
++
Sbjct: 256 REM 258
>L23648-1|AAA28034.1| 468|Caenorhabditis elegans Cyclin t protein
1.1, isoform a protein.
Length = 468
Score = 105 bits (251), Expect = 5e-23
Identities = 70/243 (28%), Positives = 121/243 (49%), Gaps = 16/243 (6%)
Frame = +2
Query: 35 KWYFTKEQLQNSPSRKCGLDADKELAYRQQAANLIQDM--------GQRLQVSQLCINTA 190
KW FTKE+++ + S + G+ ++ELA RQ AA IQ+M ++++ + A
Sbjct: 19 KWLFTKEEMKKTASIQEGMSREEELASRQMAAAFIQEMIDGLNNVKDPKMKIGHTGLCVA 78
Query: 191 IVYMHRFYAFHSFTQFHRNXXXXXXXXXXXKVEEQPRKLEYVIKVAHVCLHRGEGVNALT 370
+MHRFY HSF ++ K +E PRKL +VI V R + T
Sbjct: 79 HTHMHRFYYLHSFKKYDYRDVGAACVFLAGKSQECPRKLSHVISVWR---ERKDRKQLTT 135
Query: 371 PEQYQEQAQDLVFNENVLLQTLGFDVAIDHPHTHVVRTCHLV---KATKDLAQTSYFMAS 541
E AQ +V E+++LQT+ FD+ + PH +V+ V + + L +Y+ A+
Sbjct: 136 ETARNEAAQIIVLLESMILQTIAFDLNVHLPHIYVLDIMKKVDKKEHYRPLTSCAYYFAT 195
Query: 542 NSLHLTTMCLQYKPTVVACFCIHLASKWSNWVIPQSY-----EGRHWFSYVDKTVTMELL 706
+ + +T L+Y ++ IHL + ++N I + + E W++ D+T+T E L
Sbjct: 196 DVIAVTDWSLRYSAASMSIVIIHLMAAYANVRIERLFADFINEDSPWYAKFDETMTNEKL 255
Query: 707 EKL 715
++
Sbjct: 256 REM 258
>Z78012-6|CAB01416.1| 480|Caenorhabditis elegans Hypothetical
protein C52E4.6a protein.
Length = 480
Score = 86.6 bits (205), Expect = 2e-17
Identities = 69/240 (28%), Positives = 102/240 (42%), Gaps = 23/240 (9%)
Frame = +2
Query: 32 EKWYFTKEQ-----LQNSPSRKCGLDADKELAYRQQAANLIQDMGQRLQVSQLCINTAIV 196
+KW T ++ + N PS GL + E R LIQ L++ Q T +
Sbjct: 73 DKWLMTLDEESRLKIDNPPSLVDGLSKETESELRYLGCELIQQGAILLKLPQTAAATGQI 132
Query: 197 YMHRFYAFHSFTQFHRNXXXXXXXXXXXKVEEQPRKLEYVIKVAHVC--LHR----GEGV 358
R+Y SF ++H K+EE+PR+ V V H LHR G +
Sbjct: 133 LFQRYYYQKSFVRYHFEHAVQACLLLASKIEEEPRRPREVYNVFHRLERLHRLQQSGHDI 192
Query: 359 NALTPE---------QYQEQAQDLVFNENVLLQTLGFDVAIDHPHTHVVRTCHLVKATK- 508
N T Y Q ++ +E +L TLGF V + HPH +V H + T+
Sbjct: 193 NKETTRGMKPPAVDMNYINTKQHMINSERRILATLGFVVHVKHPHRLIVAYGHTLGITQS 252
Query: 509 --DLAQTSYFMASNSLHLTTMCLQYKPTVVACFCIHLASKWSNWVIPQSYEGRHWFSYVD 682
D+ Q S+ ++ L T + ++YKP +AC CI LA++ I HWF D
Sbjct: 253 RPDILQRSWNYMNDGLR-TDIFMRYKPETIACACIFLAARTVENPIALPSTPFHWFEAFD 311
>AY557405-1|AAS64750.1| 480|Caenorhabditis elegans cyclin L
protein.
Length = 480
Score = 86.6 bits (205), Expect = 2e-17
Identities = 69/240 (28%), Positives = 102/240 (42%), Gaps = 23/240 (9%)
Frame = +2
Query: 32 EKWYFTKEQ-----LQNSPSRKCGLDADKELAYRQQAANLIQDMGQRLQVSQLCINTAIV 196
+KW T ++ + N PS GL + E R LIQ L++ Q T +
Sbjct: 73 DKWLMTLDEESRLKIDNPPSLVDGLSKETESELRYLGCELIQQGAILLKLPQTAAATGQI 132
Query: 197 YMHRFYAFHSFTQFHRNXXXXXXXXXXXKVEEQPRKLEYVIKVAHVC--LHR----GEGV 358
R+Y SF ++H K+EE+PR+ V V H LHR G +
Sbjct: 133 LFQRYYYQKSFVRYHFEHAVQACLLLASKIEEEPRRPREVYNVFHRLERLHRLQQSGHDI 192
Query: 359 NALTPE---------QYQEQAQDLVFNENVLLQTLGFDVAIDHPHTHVVRTCHLVKATK- 508
N T Y Q ++ +E +L TLGF V + HPH +V H + T+
Sbjct: 193 NKETTRGMKPPAVDMNYINTKQHMINSERRILATLGFVVHVKHPHRLIVAYGHTLGITQS 252
Query: 509 --DLAQTSYFMASNSLHLTTMCLQYKPTVVACFCIHLASKWSNWVIPQSYEGRHWFSYVD 682
D+ Q S+ ++ L T + ++YKP +AC CI LA++ I HWF D
Sbjct: 253 RPDILQRSWNYMNDGLR-TDIFMRYKPETIACACIFLAARTVENPIALPSTPFHWFEAFD 311
>L23648-4|AAA28033.2| 555|Caenorhabditis elegans Cyclin t protein
1.2, isoform a protein.
Length = 555
Score = 85.4 bits (202), Expect = 5e-17
Identities = 58/233 (24%), Positives = 115/233 (49%), Gaps = 11/233 (4%)
Frame = +2
Query: 50 KEQLQNSPSRKCGLDADKELAYRQQAANLIQDMGQRL---QVSQLCINTAIVYMHRFYAF 220
++ L ++PSR+ G+ ++EL+ RQQ I D+ +L + A +RF+
Sbjct: 28 QDMLADTPSRREGMTYEEELSKRQQGGVFIFDIAMQLTHGKGEHGLSGVAATLFNRFFNV 87
Query: 221 HSFTQFHRNXXXXXXXXXXXKVEEQPRKLEYVIKVAHVCLHRGEGVNALTPEQYQEQAQD 400
HS + K E+ P+KL+YV+ + + + + +Q
Sbjct: 88 HSLKRCDFRDVAAACVFLAGKNEDAPKKLKYVVTQLWQFKYP-HNKQFQSEQHFLDQCNV 146
Query: 401 LVFNENVLLQTLGFDVAIDHPHTHVVRTCHLVK----ATKDLAQTSYFMASNSLHLTTMC 568
+ E+VLL+T+ FD+ +D PH +V++ V+ KD+ +T+Y+MA++ L +T
Sbjct: 147 VTLIEDVLLKTISFDINVDLPHQYVLKLMRDVEKGRNVYKDMVKTAYYMATDVLIITDWS 206
Query: 569 LQYKPTVVACFCIHLASKWSNW----VIPQSYEGRHWFSYVDKTVTMELLEKL 715
++Y +A C+++A+ + N ++P R W+ D+++T E +E +
Sbjct: 207 VRYSCASIATACVNIAAFFHNINMDDIVPFELSDR-WYRLEDQSMTREEVEAM 258
>Z83226-1|CAB05724.2| 252|Caenorhabditis elegans Hypothetical
protein F43D2.1 protein.
Length = 252
Score = 84.2 bits (199), Expect = 1e-16
Identities = 57/199 (28%), Positives = 97/199 (48%), Gaps = 6/199 (3%)
Frame = +2
Query: 38 WYFTKEQLQNSPSRKCGLDADKELAYRQQAANLIQDMGQRLQVS-QLCINTAIVYMHRFY 214
W + E L+ +PS + GL ++EL +R++ L+ ++G L + I A VY HRFY
Sbjct: 4 WIWPLEALKTTPSIRAGLTKEQELLWRREGIKLLSEVGNALNCKPRPTIGVAAVYFHRFY 63
Query: 215 AFHSFTQFHRNXXXXXXXXXXXKVEEQPRKLEYVIKVAHVCLHRGEGVNALTPEQYQEQA 394
HSF F R KVE+ P+K + V + A H E +YQ
Sbjct: 64 MIHSFQSFSREVTALSCLFLAGKVEDFPKKCKDVCQAA--VTHYPE-----IYSKYQNLV 116
Query: 395 QDLVFNENVLLQTLGFDVAIDHPHTHVVRTCHLV-----KATKDLAQTSYFMASNSLHLT 559
D++ E VLL +L FD+ + P+ ++ + + D Q ++ ++S++ T
Sbjct: 117 DDVMGLERVLLHSLKFDLHVALPYDALLDYKMMFPDMNREKITDAVQIAWTFINDSIY-T 175
Query: 560 TMCLQYKPTVVACFCIHLA 616
T+C+ +P ++A +HLA
Sbjct: 176 TLCITTEPQMIAIALLHLA 194
>L23648-5|AAN63385.1| 381|Caenorhabditis elegans Cyclin t protein
1.2, isoform b protein.
Length = 381
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/74 (27%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Frame = +2
Query: 506 KDLAQTSYFMASNSLHLTTMCLQYKPTVVACFCIHLASKWSNW----VIPQSYEGRHWFS 673
KD+ +T+Y+MA++ L +T ++Y +A C+++A+ + N ++P R W+
Sbjct: 12 KDMVKTAYYMATDVLIITDWSVRYSCASIATACVNIAAFFHNINMDDIVPFELSDR-WYR 70
Query: 674 YVDKTVTMELLEKL 715
D+++T E +E +
Sbjct: 71 LEDQSMTREEVEAM 84
>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical
protein R10E11.1b protein.
Length = 2056
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 394 AGPCVQRERSATDIRFRCSDRPPPHARC 477
A C QRE+ D F ++PPPHA C
Sbjct: 416 AHKCSQREKENRD--FAAKNQPPPHAAC 441
>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical
protein R10E11.1a protein.
Length = 2045
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 394 AGPCVQRERSATDIRFRCSDRPPPHARC 477
A C QRE+ D F ++PPPHA C
Sbjct: 416 AHKCSQREKENRD--FAAKNQPPPHAAC 441
>AB009362-1|BAA23766.1| 118|Caenorhabditis elegans protein (
Caenorhabditis elegansmRNA, partial cds. ).
Length = 118
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 394 AGPCVQRERSATDIRFRCSDRPPPHARC 477
A C QRE+ D F ++PPPHA C
Sbjct: 20 AHKCSQREKENRD--FAAKNQPPPHAAC 45
>U41993-8|AAA83449.1| 497|Caenorhabditis elegans Temporarily
assigned gene nameprotein 153, isoform a protein.
Length = 497
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +2
Query: 344 RGEGVNALTPEQYQEQAQDLVFNENVLLQTLGFDV 448
+ +NA T + +E+ +D + NEN+ + T+GFD+
Sbjct: 150 KNRAINANT-DLTEEKLRDKIKNENIEMMTIGFDL 183
>U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily
assigned gene nameprotein 153, isoform b protein.
Length = 733
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +2
Query: 344 RGEGVNALTPEQYQEQAQDLVFNENVLLQTLGFDV 448
+ +NA T + +E+ +D + NEN+ + T+GFD+
Sbjct: 386 KNRAINANT-DLTEEKLRDKIKNENIEMMTIGFDL 419
>Z92829-5|CAB07345.1| 324|Caenorhabditis elegans Hypothetical
protein F10A3.5 protein.
Length = 324
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 461 PHTHVVRTCHLVKATKDLAQTSYFMASNSLHLTTMCLQY 577
PH H+ +T +V L SYF + L L T+C Y
Sbjct: 66 PHLHITKTSFIVFTDLKLLGYSYF--TGQLALATLCSTY 102
>U64853-3|AAB04976.1| 565|Caenorhabditis elegans Hypothetical
protein K11G9.1 protein.
Length = 565
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/66 (30%), Positives = 27/66 (40%)
Frame = +1
Query: 166 LSTMYQHGDSVHASVLRLPFVHTVSQECHSCSSFVPGCEGGRAAKEAGICYKSGPRMPPQ 345
L +Y+HGD L +P+ + E VP + E C K GPR PP
Sbjct: 25 LGNLYRHGDKEVHGYLGMPYAKPPTGEMRFAKP-VPADDW----TETRDCTKYGPRCPPS 79
Query: 346 R*GGER 363
G E+
Sbjct: 80 GQGLEK 85
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,051,784
Number of Sequences: 27780
Number of extensions: 473650
Number of successful extensions: 1230
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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