Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_K24
         (854 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.7  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   2.7  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   6.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   8.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   8.3  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 223 MEGVEPMHVHYRRVDT*LRDLKPLSH 146
           M  +EP  + Y +++T L   KP ++
Sbjct: 568 MNDLEPSEIFYEKIETSLNSDKPFTY 593


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 223 MEGVEPMHVHYRRVDT*LRDLKPLSH 146
           M  +EP  + Y +++T L   KP ++
Sbjct: 568 MNDLEPSEIFYEKIETSLNSDKPFTY 593


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 569 NTLLSNGDCLMP*NMMFEPNLWS 501
           NTL+SNGD +   NM     +W+
Sbjct: 38  NTLISNGDYIEENNMPNGMQIWN 60


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 15/70 (21%), Positives = 31/70 (44%)
 Frame = +2

Query: 320 KVAHVCLHRGEGVNALTPEQYQEQAQDLVFNENVLLQTLGFDVAIDHPHTHVVRTCHLVK 499
           K + + L  G  ++A   E+Y++  Q L+    + +QT+G  +        ++R   +  
Sbjct: 239 KGSAIDLDIGPPLHADQAEEYKKIQQILIRMNKLCIQTIGGQIKPRKHEQRLLRNVGVHT 298

Query: 500 ATKDLAQTSY 529
              DL Q  +
Sbjct: 299 VVLDLLQVPF 308


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = +1

Query: 217 LPFVHTVSQECHSCSSFVPGCEGGRAAKEAGI 312
           LP+V  + Q       F   CEG  A    G+
Sbjct: 44  LPYVEIIEQPASKALRFRYECEGRSAGSIPGV 75


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = +1

Query: 217 LPFVHTVSQECHSCSSFVPGCEGGRAAKEAGI 312
           LP+V  + Q       F   CEG  A    G+
Sbjct: 44  LPYVEIIEQPASKALRFRYECEGRSAGSIPGV 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,785
Number of Sequences: 438
Number of extensions: 6000
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)