Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_K19
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...   154   2e-38
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    29   1.1  
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    28   2.0  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    28   2.0  
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...    28   2.0  
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr...    27   3.4  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    27   3.4  
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch...    26   6.0  

>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score =  154 bits (373), Expect = 2e-38
 Identities = 67/125 (53%), Positives = 89/125 (71%), Gaps = 1/125 (0%)
 Frame = +3

Query: 135 VTQVFHGADSDVLWLQRDFGVYLVGLFDTYHAAKSLGLPALSLKFLLMKYCGVDTDKTYR 314
           + +VFHGA  D++WLQRDFG+Y+V LFDTY+A K LG     L FLL KYC  D DK Y+
Sbjct: 291 IIKVFHGATMDIIWLQRDFGLYVVNLFDTYYATKVLGFEGHGLAFLLQKYCDYDADKRYQ 350

Query: 315 LADWRIRPLPDVLIKYARMDTHYLLYVWRVMKNQIIEKNA-GQTNMLLSVFEDSRQTCAS 491
           +ADWRIRPLP  ++KYA+ DTHYLLY+W  ++N++I K+A  + N++ SVF  S+Q    
Sbjct: 351 MADWRIRPLPREMLKYAQSDTHYLLYIWDHLRNELISKSAERKENLMQSVFNSSKQISLR 410

Query: 492 TYNKE 506
            Y  E
Sbjct: 411 KYELE 415


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -3

Query: 416 LILHNAPNVQKIVRIHASVLDQHVRKRTNAPVRQTIRFIGVNAAILHQ-KKFE 261
           ++LHNA  +    +   ++++ H+++  +A VR  +    VN  +LH   +FE
Sbjct: 257 VLLHNAQEMLDFSKGEENLIESHIKEIYDAGVRVVVTSGNVNDLVLHYLNRFE 309


>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 377 RIHAS-VLDQHVRKRTNAPVRQTIRFIGVNAAILHQKKFER 258
           R+H   + ++H +KRT   V+     +G N  ++ +K+ +R
Sbjct: 57  RMHKKGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQR 97


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -1

Query: 448 IFVCPAFFSII*FFITRQ--TYKR*CVSMRAYLINTSGSGRMRQSARRYVLSVSTPQY 281
           IF+C  FF+++ FF       Y + C  +  YL+   G   +R   +R  LSV +P +
Sbjct: 213 IFICYIFFTVLSFFNVPDAIVYSKLCRGLMFYLLYPFGQ-HVRHKVKR--LSVRSPAH 267


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 377 RIHAS-VLDQHVRKRTNAPVRQTIRFIGVNAAILHQKKFER 258
           R+H   + ++H +KRT   V+     +G N  ++ +K+ +R
Sbjct: 57  RMHKKGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQR 97


>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 539

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +2

Query: 389 VRLARYEESNNREE-CWTNEYATVGLRGQPSDLRLYI 496
           V L  Y +   ++E CW    AT G  GQP  +R  +
Sbjct: 380 VHLLSYADYKTKKEACWAISNATSGGLGQPDQIRYLV 416


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -3

Query: 449 HIRLSSILLDYLILHNAPNVQKIVRIHASVLDQHVRKRTNAPVRQTIRF-IGVNAAILHQ 273
           +I L  +  D   L ++ N+QKI++++  +L+  +    N    +T+ F +   A  +HQ
Sbjct: 219 NIVLQCMSTDDYFLSSSKNIQKIIKVYVDMLNSFI--SPNVTTFETVIFALCRRAKFVHQ 276

Query: 272 K 270
           K
Sbjct: 277 K 277


>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 96

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +3

Query: 36  RRILISVHFFYLRIKMNSALNPDAPEFYPHLAAVTQVF 149
           R IL SV  F L +K+ +    DA + YPH+AAV  +F
Sbjct: 26  RGILKSVDQF-LNVKLENISVVDASK-YPHMAAVKDLF 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,237
Number of Sequences: 5004
Number of extensions: 60283
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)