Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_K19
(862 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0572 - 19604643-19604745,19604947-19605629,19605786-196062... 117 1e-26
10_08_0136 - 15122420-15122469,15123845-15124334,15124822-151249... 104 8e-23
03_01_0397 + 3086142-3086489,3087097-3087252,3088043-3088201,308... 47 2e-05
07_03_0232 + 15539586-15539696,15541524-15541727,15542612-155426... 38 0.010
05_03_0667 + 16781857-16782001,16784506-16784544,16785229-167859... 33 0.39
06_02_0238 - 13357877-13357954,13358186-13358302,13358537-133586... 30 2.1
02_02_0263 - 8400488-8400913,8401011-8401481,8401581-8401843,840... 29 4.8
12_01_0748 - 6728221-6728305,6728788-6728842,6729202-6729289,672... 29 6.3
05_01_0035 - 232656-232781,233212-233322,233419-233563,233749-23... 29 6.3
05_03_0194 + 9547626-9547715,9549235-9549311,9549493-9549564,954... 28 8.3
>07_03_0572 -
19604643-19604745,19604947-19605629,19605786-19606284,
19606370-19606878,19607110-19607148,19607347-19607411,
19609081-19609201,19610229-19610315,19611096-19611179,
19611925-19612175,19612869-19612962,19613043-19613284,
19614187-19614505
Length = 1031
Score = 117 bits (281), Expect = 1e-26
Identities = 51/98 (52%), Positives = 68/98 (69%)
Frame = +3
Query: 135 VTQVFHGADSDVLWLQRDFGVYLVGLFDTYHAAKSLGLPALSLKFLLMKYCGVDTDKTYR 314
+ +FHGAD+DVLWLQRDF +Y+V +FDT A + L P SL +LL YCGV TDKT +
Sbjct: 300 IYMIFHGADNDVLWLQRDFHIYVVNMFDTAKACEVLSKPQKSLAYLLELYCGVTTDKTMQ 359
Query: 315 LADWRIRPLPDVLIKYARMDTHYLLYVWRVMKNQIIEK 428
DWR+RPL +I+YAR D HYLLY+ + +++ K
Sbjct: 360 REDWRLRPLTPEMIQYARCDAHYLLYIANCLASELHAK 397
>10_08_0136 -
15122420-15122469,15123845-15124334,15124822-15124935,
15125022-15125303,15125422-15125591,15125670-15125757,
15126128-15126173,15126254-15126336,15126595-15126694,
15127002-15127081,15127200-15127283,15127373-15127531,
15128617-15128772,15129634-15130197
Length = 821
Score = 104 bits (250), Expect = 8e-23
Identities = 50/141 (35%), Positives = 87/141 (61%)
Frame = +3
Query: 141 QVFHGADSDVLWLQRDFGVYLVGLFDTYHAAKSLGLPALSLKFLLMKYCGVDTDKTYRLA 320
+V HGAD D++WLQRDFG+Y+ LFDT A++ L + SL+ LL +CGV +K
Sbjct: 293 KVMHGADRDIIWLQRDFGIYVCNLFDTGQASRILQMDRNSLEHLLHHFCGVTANK----- 347
Query: 321 DWRIRPLPDVLIKYARMDTHYLLYVWRVMKNQIIEKNAGQTNMLLSVFEDSRQTCASTYN 500
+YAR DTHYLLY++ +M+ +++++++ + ++LL V++ S++ C Y
Sbjct: 348 ------------EYAREDTHYLLYIYDLMRLRLVKESSDENDLLLEVYKRSKEICLQLYE 395
Query: 501 KEVIHDESHIPLYIRSKKNFD 563
KE++ S++ ++ + FD
Sbjct: 396 KELLTHSSYLYIHGLKENEFD 416
>03_01_0397 +
3086142-3086489,3087097-3087252,3088043-3088201,
3088305-3088388,3089266-3089348,3089486-3089531,
3089825-3089912,3090009-3090178,3090317-3090430,
3090497-3090604,3090987-3091202
Length = 523
Score = 46.8 bits (106), Expect = 2e-05
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = +3
Query: 141 QVFHGADSDVLWLQRDFGVYLVGLFDTYHAAK 236
+V HGAD D++WLQRDF +Y+ LFDT K
Sbjct: 221 KVMHGADRDIMWLQRDFHIYVCNLFDTGQVQK 252
>07_03_0232 +
15539586-15539696,15541524-15541727,15542612-15542674,
15542896-15543027,15543766-15543889,15545052-15545365,
15545538-15545614,15545716-15545851,15546352-15546555,
15546630-15546689
Length = 474
Score = 37.9 bits (84), Expect = 0.010
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +3
Query: 234 KSLGLPALSLKFLLMKYCGVDTDKTYRLADWRIRPLPDVLIKYARMDTHYLLYVWRVMKN 413
K L SL + + GV K + +DW RPL + I+YA D +YLL ++ +
Sbjct: 147 KRLPRETKSLATICEELLGVYLSKELQCSDWSYRPLSEGQIQYAASDAYYLLDIFDLFHQ 206
Query: 414 QI-IEKNAGQTNMLLS 458
+I E TN L S
Sbjct: 207 KIRTEGKCLPTNELTS 222
>05_03_0667 +
16781857-16782001,16784506-16784544,16785229-16785910,
16786003-16786087,16786747-16786888,16787391-16787575,
16788011-16788143,16788317-16788405,16788530-16788604,
16789060-16789173,16789264-16789305
Length = 576
Score = 32.7 bits (71), Expect = 0.39
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 261 LKFLLMKYCGVDTDKTYRLADWRIRPLPDVLIKYARMDTHYLLYVWRVMKNQ 416
L L K G +KT R ++W RPL +YA +D L++++ +K Q
Sbjct: 495 LSGLSKKILGAGLNKTRRNSNWEQRPLTQNQKEYAALDAVVLVHIFHHVKGQ 546
>06_02_0238 -
13357877-13357954,13358186-13358302,13358537-13358641,
13359301-13359393,13359801-13359888,13359979-13360028,
13361147-13361205,13361297-13361516,13361611-13361691,
13364034-13364111,13364203-13364298,13364370-13364435
Length = 376
Score = 30.3 bits (65), Expect = 2.1
Identities = 25/101 (24%), Positives = 47/101 (46%)
Frame = +3
Query: 255 LSLKFLLMKYCGVDTDKTYRLADWRIRPLPDVLIKYARMDTHYLLYVWRVMKNQIIEKNA 434
++ +FLL G D +K R+ +IR + ++ I+ MD H + ++N I+E+
Sbjct: 170 ITRQFLLHIVSGTDVEKDVRVYKRKIRAVGEMEIRSDLMDAHLYAFKRTTLQN-ILEEKE 228
Query: 435 GQTNMLLSVFEDSRQTCASTYNKEVIHDESHIPLYIRSKKN 557
++ L V ++ V+ D SH+ Y S +N
Sbjct: 229 SYRSIRLEVLP------YLVRSQLVVGDASHLSGYSFSAQN 263
>02_02_0263 -
8400488-8400913,8401011-8401481,8401581-8401843,
8401964-8402225
Length = 473
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 90 ALNPDAPEFYPHLAAVTQVFHGADSDVL 173
A+N +A F HLA V VFH DV+
Sbjct: 399 AINTNANAFVSHLAGVDSVFHALPVDVI 426
>12_01_0748 -
6728221-6728305,6728788-6728842,6729202-6729289,
6729681-6729818,6729978-6730142,6730235-6730354,
6730555-6730631,6730738-6731113,6731523-6732617
Length = 732
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 110 RCIWIKRGVHFDTQIKEVNRNQNTTAAFVERAL*IP 3
RC+W +R +H D K + NT + R L +P
Sbjct: 185 RCLWCQRQIHVDCHAKLLKETGNTCDLGLLRRLIVP 220
>05_01_0035 - 232656-232781,233212-233322,233419-233563,233749-233882,
234341-234412,234485-234548,234632-234699,234894-235129,
236857-237166,237495-238460,238752-238931,239041-239346,
239593-239727,239810-240046,240120-240308,240521-240709,
240929-241024,241117-241323,241700-241893,242979-243216
Length = 1400
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +3
Query: 186 DFGVYLVG---LFDTYHAAKSLGLPALSLKFLLMKYCGVDTDK 305
DFG ++ L DT+H+ SL P +LK+ K G+ K
Sbjct: 913 DFGFLILNDSSLVDTFHSFPSLSRPHSTLKYTFKKLLGLKNQK 955
>05_03_0194 +
9547626-9547715,9549235-9549311,9549493-9549564,
9549648-9549719,9550047-9550118,9550199-9550225,
9550226-9550297,9550382-9550453,9550897-9550968,
9551047-9551121,9551226-9551297,9551384-9551449,
9551544-9551609,9551683-9551727,9551822-9551886,
9551971-9552350,9552419-9552545,9552688-9552846,
9552929-9553047,9553182-9553392,9553582-9553762,
9553845-9553995,9554086-9554448
Length = 901
Score = 28.3 bits (60), Expect = 8.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 374 YALSFVRLARYEESNNREECWTNEY 448
+AL V+ R++E N E CW N +
Sbjct: 19 WALGAVQWCRWQEGNKFERCWRNTF 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,804,350
Number of Sequences: 37544
Number of extensions: 419754
Number of successful extensions: 974
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -