Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_K13
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    28   2.0  
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch...    27   4.7  
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    27   4.7  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    26   8.1  

>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 132 LKMPRNRFETDWLSERKSLMTFPLRRQKYLTLSKNLTFTLVPMV 263
           L+ P  RF+     + + L T  LR++  LTL K+L  T +P++
Sbjct: 527 LQFPERRFKVGSSVKCRVLSTNVLRKRVLLTLKKSLLNTDLPLI 570


>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 26/101 (25%), Positives = 38/101 (37%)
 Frame = +2

Query: 20  RRRTVYYXELAEEWERCERKLKDVGHWLEATTRTLETPQNAKKPLRDRLALREKIINDIS 199
           R R     +LAEE + CE+KL+ +           E  +   K + D+LAL E    D  
Sbjct: 83  RLRNDVLKDLAEEIQGCEKKLESLYE---------EVAKAKAKAVEDQLALEEA---DKE 130

Query: 200 TQKTKISYAVEKLNVHFGPDGVAAQSVGPEGVEANARQLTE 322
            +K K    VE  N          +   P  +E      T+
Sbjct: 131 AKKAKTEAPVEAANKSLRSRKKTPEIAAPANIEPEVAPTTK 171


>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 455

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +2

Query: 134 QNAKKPLRDRLALREKIINDISTQKTKISYAVEKLNVHFGP--DGVAAQSVGP 286
           +N  KP+  R+      +   S  K +I+  VEK+N    P  D +  +++ P
Sbjct: 224 ENVSKPINPRMERFSSEVKSSSILKQQIAAVVEKINYDIRPQRDQIPEENIVP 276


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +2

Query: 101 LEATTRTLETPQNAKKPLRDRLALREKIINDISTQKTKISYAVEKL 238
           L      L+  +N      ++L++ +  IN+I TQ   +    EKL
Sbjct: 289 LSIVASNLKQAENKTISYEEKLSIAQNSINEIQTQNRDLKLETEKL 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,492,290
Number of Sequences: 5004
Number of extensions: 23335
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)