Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_K11
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual    30   0.47 
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    29   0.82 
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce...    26   5.8  
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom...    26   5.8  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   7.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   7.6  

>SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -2

Query: 290 DKILL*NKQYFTSIVQALATLALLFSCN 207
           +KILL N+  F S+V+   TLA+L  CN
Sbjct: 105 EKILLWNQLKFMSLVRMFTTLAVLAQCN 132


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +2

Query: 362 KGQVSLGYFATYKDYPKISIQQTLCSYWERMKKNVTHIGSS*LQDAKVSSTQNVVKYVGS 541
           KG+++     TYK+    ++Q T  +  E + K+   + +  +Q+A+  + +  V+YV  
Sbjct: 64  KGKIAKEGLYTYKN----AVQNTSVTAIENVVKHFIELANKRVQEAQEKADKISVEYVDD 119

Query: 542 LXCTVTP 562
           L  T TP
Sbjct: 120 LEATETP 126


>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 395

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 469 AHRIILIARCKSFQYTKRGEICRVPGLYGYAICWRTADT 585
           AH ++ I   KSF+     E C+V G     + +R ADT
Sbjct: 259 AHAMMSIPATKSFEIGSGREGCKVAGSKHNDLFYRNADT 297


>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 420

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 544 GLYGYAICWRTADTYTDAAHPTRDLQALHSIR 639
           G++    C R  D +   +H TR L+   SIR
Sbjct: 333 GMFPVNYCTRIYDLHVQKSHETRSLERARSIR 364


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 561 GVTVQXRDPTYFTTFCVLETFASCNQD 481
           G+ +  +    F +F +LET  SCN D
Sbjct: 764 GIRLLRKSSEVFYSFSILETVCSCNLD 790


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 20/78 (25%), Positives = 35/78 (44%)
 Frame = -2

Query: 461 FSSFAPSMNTMSAVSISSDSLCKSRSNPGRPALSTEAAQHVPGTLFAMDTKFHTILRDKI 282
           FSS + S  +  + SISS S   S   P   +L   ++  + G+   + +   TI     
Sbjct: 603 FSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSS 662

Query: 281 LL*NKQYFTSIVQALATL 228
           L     Y +S++ + +TL
Sbjct: 663 L---STYSSSVIPSSSTL 677


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,227,595
Number of Sequences: 5004
Number of extensions: 64998
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)