Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_K10
         (845 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    28   7.3  
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    28   7.3  
Z81109-17|CAB03241.2|  497|Caenorhabditis elegans Hypothetical p...    28   9.6  
AC025721-9|AAK29904.3|  639|Caenorhabditis elegans Hypothetical ...    28   9.6  

>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
           repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 183 SRPIGFPDTPNRTTTXSCRRQIWR*RLNNAKTSDRS 290
           S PI   D PN T+    R+ +W+  +N +K  D S
Sbjct: 673 SNPIVVDDPPNVTSNPLRRQNVWQASINLSKVDDDS 708


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
           kinase protein.
          Length = 2393

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 183 SRPIGFPDTPNRTTTXSCRRQIWR*RLNNAKTSDRS 290
           S PI   D PN T+    R+ +W+  +N +K  D S
Sbjct: 671 SNPIVVDDPPNVTSNPLRRQNVWQASINLSKVDDDS 706


>Z81109-17|CAB03241.2|  497|Caenorhabditis elegans Hypothetical
           protein R10D12.10 protein.
          Length = 497

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 389 RTHKPTCRGLTDS*IPSCPVKTL--LPPKQTQTQCRQYRAAGHRTPHRPVAR 538
           +T + T    + + +P    K +  LPPKQ  T+     +  H+TP  P+ +
Sbjct: 420 KTTERTSEAPSTNALPKAKPKKIRTLPPKQKHTKTSSTSSVSHQTPPSPIKK 471


>AC025721-9|AAK29904.3|  639|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.5 protein.
          Length = 639

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +1

Query: 253 DDDSTTPRLPIEANGDLELIDRLSKLPVDKQPFWFINWQALEAHRK 390
           +D++   +L  ++ G L+L+D  S LP  K+    + W+  +   K
Sbjct: 316 EDEAVVAQLLRDSKGSLKLVDTSSLLPELKRETGVVQWKVFDRDMK 361


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,816,741
Number of Sequences: 27780
Number of extensions: 362439
Number of successful extensions: 848
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)