Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_K09
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch...    27   3.3  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    27   3.3  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    27   4.3  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    26   5.7  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    26   5.7  

>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 216

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 17/67 (25%), Positives = 25/67 (37%)
 Frame = +3

Query: 297 ETKEKADSITTYLTNAGYNKYDFWTSGNNLGTDMFLWMSTGLPFNATFNYMRRPPIDAPA 476
           E K KA +IT +        YD     N      FLW++  L  N    ++  P +  P 
Sbjct: 127 ERKVKAKAITFH-RKKNLQYYDISAKSNYNFEKPFLWLARKLVGNPNLEFVASPALAPPE 185

Query: 477 QHADDSM 497
              D  +
Sbjct: 186 VQVDQQL 192


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 487 SACWAGASMGGLRM*LKVALNGRPVLIHKNMSVPRLLPDVQK 362
           +A WA  S   L+  L+ A+N +P+   K+ S    +P +QK
Sbjct: 349 TAAWAKLSPSVLQERLRAAVNQQPLDALKSSSTQTSIPKIQK 390


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 456 PPIDAPAQHADDSMD-PLDVPQGSTAPQRTARHGRYSRTEHVMTNG 590
           PP+    + +  ++  P D PQGS+ P  T     +S   H  T+G
Sbjct: 2   PPVSKNTRTSSKTVKKPYDPPQGSSRPFFTVLKRAFSSVLHPFTSG 47


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 594 IALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYGS 698
           +++  PTF W          ++C  TRC YY+ GS
Sbjct: 147 VSVDQPTFQW---------GWLCVNTRCLYYDTGS 172


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 470 SIDGRSPHVVKSRIKWQTGAHPQ--KHVCAEVITRCPEVI 357
           SIDG   HVV+    W  G H Q  + V A ++   PEVI
Sbjct: 570 SIDGGYGHVVEDEKAW--GRHDQVPRQVFASMLNLPPEVI 607


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,083,110
Number of Sequences: 5004
Number of extensions: 64404
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)