Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_K05
(833 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi... 123 3e-29
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 61 2e-10
SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|... 32 0.087
SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|... 32 0.087
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo... 28 1.4
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 24 2.4
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 27 3.3
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 27 3.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.3
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy... 26 5.7
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 26 5.7
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb... 26 5.7
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch... 26 7.6
>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
Php5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 123 bits (297), Expect = 3e-29
Identities = 58/104 (55%), Positives = 81/104 (77%), Gaps = 2/104 (1%)
Frame = +3
Query: 312 LQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVK--MVSAEAPVLFAKAAEIF 485
L ++W K ++ ++ + + KT LPLARIKK+MK D++VK M+SAEAP LFAK +EIF
Sbjct: 86 LAEYWQKTIDTLEH-DDQAVKTLHLPLARIKKVMKTDDDVKNKMISAEAPFLFAKGSEIF 144
Query: 486 IHELTLRAWSHTEENKRRTLQRNDIATAILKSDQFDFLIDIVPR 617
I ELT+RAW H ++N+RRTLQR+DIA A+ KS+ +DFLIDI+ +
Sbjct: 145 IAELTMRAWLHAKKNQRRTLQRSDIANAVSKSEMYDFLIDIISK 188
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 60.9 bits (141), Expect = 2e-10
Identities = 35/104 (33%), Positives = 55/104 (52%)
Frame = +3
Query: 351 KVNSEDFKTQALPLARIKKIMKLDEEVKMVSAEAPVLFAKAAEIFIHELTLRAWSHTEEN 530
K N + P+ARIKKIM+ D++V V+ PV+ +KA E+F+ + + T +
Sbjct: 13 KPNPATYWKSRFPVARIKKIMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTRLH 72
Query: 531 KRRTLQRNDIATAILKSDQFDFLIDIVPRHEVKPTKPRYDAARK 662
+ + + + + A+ +QFDFL DIV E P P A RK
Sbjct: 73 QAKRVTVSHLKHAVQSVEQFDFLQDIV---EKVPDAPPIKAERK 113
>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
3|||Manual
Length = 132
Score = 32.3 bits (70), Expect = 0.087
Identities = 17/74 (22%), Positives = 34/74 (45%)
Frame = +3
Query: 381 ALPLARIKKIMKLDEEVKMVSAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDI 560
A P+ R+ ++++ + V A APV A E E+ A + +NK+ + +
Sbjct: 26 AFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHL 85
Query: 561 ATAILKSDQFDFLI 602
AI ++ + L+
Sbjct: 86 QLAIRNDEELNKLL 99
>SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 32.3 bits (70), Expect = 0.087
Identities = 17/74 (22%), Positives = 34/74 (45%)
Frame = +3
Query: 381 ALPLARIKKIMKLDEEVKMVSAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDI 560
A P+ R+ ++++ + V A APV A E E+ A + +NK+ + +
Sbjct: 26 AFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHL 85
Query: 561 ATAILKSDQFDFLI 602
AI ++ + L+
Sbjct: 86 QLAIRNDEELNKLL 99
>SPAC9E9.10c |cbh1|cbh|centromere binding protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 514
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 662 FPGGVVTRFRRLDFMPRHYVDQEIELIRFQYSCRYVVALQ 543
F G + +FRR ++ + V+Q +E I+F+ Y V +Q
Sbjct: 126 FSNGWLDKFRRRHYIQQSAVNQALESIKFEVFREYPVHIQ 165
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 24.2 bits (50), Expect(2) = 2.4
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -3
Query: 801 PPPPPXXPPXV 769
PPPPP PP V
Sbjct: 775 PPPPPPPPPAV 785
Score = 21.4 bits (43), Expect(2) = 2.4
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = -3
Query: 822 PPXX*RXPPPPPXXPP 775
PP PPPP PP
Sbjct: 767 PPGVAGAGPPPPPPPP 782
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3
Query: 204 WTFCSFFNQLHETNAPMFLFNYHSKLILKLCFGKL 100
WTF F+ Q++ +LF+Y ++ L F L
Sbjct: 1080 WTFTLFWYQIYNNFDANYLFDYTYVMLFNLIFSSL 1114
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 27.1 bits (57), Expect = 3.3
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Frame = +2
Query: 491 RANVASLVA-YGG-K*KADSAAQRHSDSYIEIGSVRFPDRHSAAA*SQADETALRRRQES 664
R NVA +A YGG + AAQ ++ YI+ GS P A A +
Sbjct: 17 RQNVAGNIASYGGPEIDTQLAAQMNAQMYIQQGSAMAPQPRRARRHKDAHAYDMSLTDAE 76
Query: 665 PQHGSVLPPVGAAASGGPT 721
P V+ P + PT
Sbjct: 77 PALAPVMSPAIPPSMNYPT 95
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/42 (33%), Positives = 16/42 (38%)
Frame = -3
Query: 798 PPPPXXPPXVPLEXRAVSRFEAANCSVGPPDAAAPTGGSTDP 673
PP P P PL V+ + S PP AP S P
Sbjct: 195 PPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGHAPNVTSESP 236
>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 26.2 bits (55), Expect = 5.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 644 LRRRQESPQHGSVLPPV 694
LR R +SP+H S +PP+
Sbjct: 59 LRMRMQSPKHASYIPPL 75
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 26.2 bits (55), Expect = 5.7
Identities = 18/45 (40%), Positives = 20/45 (44%)
Frame = -1
Query: 674 RAGGFPGGVVTRFRRLDFMPRHYVDQEIELIRFQYSCRYVVALQS 540
R GGF GG R F P DQ IEL F + C + QS
Sbjct: 7 RGGGFRGG---RGGSRPFTPSGPPDQVIELGLFMHDCEGEMVCQS 48
>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 26.2 bits (55), Expect = 5.7
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = -2
Query: 559 MSLRCRVRLLFSSVCDQARNVSSCIKISAAFANKTGASADTIFTXXXSFMIFLMRANGKA 380
+ CR L + ++ R ++S SAA N + DTI IFL++ G+
Sbjct: 79 LGFNCRFYSLAKYIDERTREMTSSPVKSAASENHVFSRNDTIERCLADLEIFLLKEKGQV 138
Query: 379 WVLKSSELT 353
+ ++ T
Sbjct: 139 AIYDATNGT 147
>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 150
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 357 NSEDFKTQALPLARIKKIMKL 419
N ++ K Q LPL IKKI K+
Sbjct: 16 NLQEVKPQVLPLEEIKKIYKI 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,229
Number of Sequences: 5004
Number of extensions: 50125
Number of successful extensions: 165
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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