Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_K01
         (1034 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0658 - 20366559-20367562,20367745-20367937                       30   3.5  
12_02_0954 - 24757417-24758214                                         29   6.0  
08_01_0621 - 5426210-5427787                                           29   6.0  
02_05_0040 + 25341418-25341810                                         29   6.0  
03_03_0146 - 14835236-14835445,14835525-14835714,14836740-14837269     29   8.0  

>07_03_0658 - 20366559-20367562,20367745-20367937
          Length = 398

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = -2

Query: 340 VVVGSRHRMRMILRQHGFGQCVEQRPLVPEVPVKRRLLNPQPFRQFACRQTVYADLVQQV 161
           V+ G+ H + M L +HG    V  + L+P        L    FRQ       + DL   V
Sbjct: 251 VIPGTEHALNMRLTEHGLDGHVSIKDLIPLAAANADELLSDAFRQLGLAGVEWNDLFWVV 310

Query: 160 QGG 152
             G
Sbjct: 311 HPG 313


>12_02_0954 - 24757417-24758214
          Length = 265

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -2

Query: 451 TXERPRPAARAHGAIVLAVGEQRLPEAAG---IPDQK*APVVVGSRH 320
           T +RPRP+  A  A+  A+       A+G      Q+ AP VV S+H
Sbjct: 100 TRKRPRPSRPARAAVAAAIAAAAAASASGSQIAAQQQQAPPVVMSQH 146


>08_01_0621 - 5426210-5427787
          Length = 525

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -2

Query: 472 AWAPXRDTXERPRPAARAHGAIVLAVGEQRLPEAAG 365
           AWAP  D  +R     RAHG  V  VG    P+A G
Sbjct: 362 AWAPVTDIGDRAAFVTRAHGFTVGVVGPD--PDADG 395


>02_05_0040 + 25341418-25341810
          Length = 130

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -1

Query: 395 RRAAPA*SCGHSRSEMSASRRRLSAPNAYDSPP 297
           RRAAP   CG S+   S  +RR  AP    S P
Sbjct: 74  RRAAPRRRCGGSKRRCSGPQRRRGAPRRRCSGP 106


>03_03_0146 - 14835236-14835445,14835525-14835714,14836740-14837269
          Length = 309

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -2

Query: 469 WAPXRDTXERPRPAARAHGA 410
           WA  R    RPRPA RA GA
Sbjct: 102 WAERRAASRRPRPAPRAEGA 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,214,898
Number of Sequences: 37544
Number of extensions: 412105
Number of successful extensions: 1077
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3047748156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)