Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_J20
(859 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 31 0.28
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 30 0.48
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 28 1.5
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom... 28 2.0
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 27 2.6
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 27 2.6
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 27 2.6
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 27 3.4
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 27 4.5
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 27 4.5
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 26 6.0
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 6.0
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 26 7.9
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro... 26 7.9
SPBC8D2.12c |||mitochondrial DNA binding protein |Schizosaccharo... 26 7.9
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 30.7 bits (66), Expect = 0.28
Identities = 29/129 (22%), Positives = 54/129 (41%)
Frame = +1
Query: 127 STLESESKVLKRTSNRKSEKSILHELLDMSASSTDAVRVTHKIDPKFDEEEEVVIAVDSN 306
S E E + + + +K S D S+ S+ + + + +EEEEVV +
Sbjct: 144 SESEEEEEAVVKIEEKKESSS------DSSSESSSSESESESSSSESEEEEEVVEKTEEK 197
Query: 307 LELATKNELENMSTSSLFYITRDNQVIDVEKAETIEEDLIXAKLRQIDEHSPAMERKRLP 486
E ++++ ++ S+S + D+ ++E+ ED K E PA K P
Sbjct: 198 KEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSEDEKKRKAEPASEERPAKITK--P 255
Query: 487 VXDEDDIDT 513
D ++ T
Sbjct: 256 SQDSNETCT 264
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 29.9 bits (64), Expect = 0.48
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Frame = +1
Query: 370 RDNQVIDVEKAETIEEDLIXAK--LRQIDEHSPAMERKRL--PVXDEDDIDTKLXEVTSD 537
+ + ++ + +E +E DL+ + +RQ+ E A+ER+RL + D + ++ E +
Sbjct: 679 KQDNLVTITMSEKVELDLLREEKAIRQVQEAEDALERERLFREINDLQIQNAEMKEQVYE 738
Query: 538 LNKTDNRKSVRPADDTNDLXRI 603
T ++K V N+ R+
Sbjct: 739 KESTISQKEVEITSLRNEKDRL 760
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 28.3 bits (60), Expect = 1.5
Identities = 29/127 (22%), Positives = 57/127 (44%), Gaps = 5/127 (3%)
Frame = +1
Query: 226 TDAVRVTHKIDPK-FDEEEEVVIAVDSNLELATKNELENMSTSSLFYITRD--NQVIDVE 396
TD R+ + + F +E+++ + ++ K E +S +TR+ +V + E
Sbjct: 163 TDGPRLLRGTEIRLFMKEDQLQYLEEKTIKDTVKKHSEFISYPIQLVVTREVEKEVPEEE 222
Query: 397 KAETI--EEDLIXAKLRQIDEHSPAMERKRLPVXDEDDIDTKLXEVTSDLNKTDNRKSVR 570
+ E + EED K+ ++D+ S E+K V + T +LNKT +
Sbjct: 223 ETEEVKNEEDDKAPKIEEVDDESEKKEKKTKKVKE-------TTTETEELNKTKPIWTRN 275
Query: 571 PADDTND 591
P++ T +
Sbjct: 276 PSEVTKE 282
>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 217
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/72 (26%), Positives = 37/72 (51%)
Frame = +1
Query: 124 KSTLESESKVLKRTSNRKSEKSILHELLDMSASSTDAVRVTHKIDPKFDEEEEVVIAVDS 303
+S+ E E++ + S S S++ + +D S VR + + K D E+ D+
Sbjct: 94 ESSYEDETETANKLSRVSSLVSVIRQTIDRKKSLERRVR--EEQEEKTDNED------DN 145
Query: 304 NLELATKNELEN 339
++E++T+ LEN
Sbjct: 146 DVEISTQESLEN 157
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 27.5 bits (58), Expect = 2.6
Identities = 19/74 (25%), Positives = 33/74 (44%)
Frame = +1
Query: 193 LHELLDMSASSTDAVRVTHKIDPKFDEEEEVVIAVDSNLELATKNELENMSTSSLFYITR 372
LH +LD+ ++ V V D +EEE + A ++N + + + + TR
Sbjct: 405 LHSILDIFDANPKIVIVEQVEDENEEEEEAIAAAENNNGVIQVQGSVVSFLERLDDEFTR 464
Query: 373 DNQVIDVEKAETIE 414
Q+ID E I+
Sbjct: 465 SLQMIDPHTPEYID 478
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 27.5 bits (58), Expect = 2.6
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +1
Query: 76 ESFVPKDDLACDLVHKKSTLESESKVLKRTSNRKSEKSI-LHELLDMSASSTDAVRVTHK 252
E+F+PK +L+ K+ ++E +S + SN+ EK + +++++ A +V +
Sbjct: 419 ETFLPKLKAERELLSKQESMEKQSMHVDEESNQILEKFLDVYDIIKAKLPPNVAEKVDYY 478
Query: 253 IDPKFDEEEEVVIAV 297
++ E E+ IA+
Sbjct: 479 VE-TIIETPEIGIAI 492
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 27.5 bits (58), Expect = 2.6
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +1
Query: 256 DPKFDEEEEVVIAVDSNLELATK-NELENMSTSSLFYITRDNQVIDVEKAETI-EEDLIX 429
DP + +EEEV+ A +L+L+ +EL N + N +I +KAE + ++ +
Sbjct: 606 DPTYSDEEEVLFAPPGDLQLSESIDELNNNIEELKAQLNAINTLI--KKAELVADQKQLK 663
Query: 430 AKLRQIDEHSPAMERK 477
+ + E A+ RK
Sbjct: 664 SLTKNHQEIEKAIHRK 679
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 27.1 bits (57), Expect = 3.4
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = -2
Query: 384 DLIVSCYVEEATSGHVFEFIFRGKFQIRVDRYDYFF-LFI-EFRID 253
DL V YV E T H+++ I +++ ++FF LFI +FR+D
Sbjct: 346 DLTVFEYVLEHTLPHLYQKIIELDMDLKLITINWFFSLFIKDFRLD 391
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 26.6 bits (56), Expect = 4.5
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = +1
Query: 310 ELATKNELENMSTSSLFYITRDNQVIDVEKAETIEEDLIXAKLRQIDEH--SPAMERKRL 483
EL + E+E FY+ R D+E+A+ I K+ + S A +K L
Sbjct: 913 ELLLRIEMEGEREHIGFYVGRTYH--DLERAQREMIKFIVNKMEPVINQNLSTATLKKLL 970
Query: 484 PVXDEDDIDTKLXEVTSDLNKT 549
D+D + VTS LN+T
Sbjct: 971 SANTWMDLDKTMTSVTSLLNRT 992
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 26.6 bits (56), Expect = 4.5
Identities = 22/101 (21%), Positives = 50/101 (49%)
Frame = +1
Query: 142 ESKVLKRTSNRKSEKSILHELLDMSASSTDAVRVTHKIDPKFDEEEEVVIAVDSNLELAT 321
+ + KR SNR E ++ +E+ + A A ++++ D+ + +A DS++ L+
Sbjct: 192 QKRFRKRVSNRTIE-AVENEVDRLLAMDERAESTSNEL---IDQAQ---LARDSSIALSE 244
Query: 322 KNELENMSTSSLFYITRDNQVIDVEKAETIEEDLIXAKLRQ 444
+ M+ I RD+Q + + + ++ED + ++ Q
Sbjct: 245 DTSFDGMAGLRGTSIDRDDQSVQTDMFDGMDEDDLAGQIEQ 285
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 26.2 bits (55), Expect = 6.0
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = +1
Query: 277 EEVVIAVDSNLELATKNELENMSTSSLFY-ITRDNQVID----VEKAETIEEDL 423
EEVV A++ + +L +++++EN + Y I N + V K ETI E+L
Sbjct: 48 EEVVEAINGSPDLLSESDVENAKNNEHTYDIDNKNFNFEPKNSVNKTETIREEL 101
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 6.0
Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Frame = +1
Query: 166 SNRKSEKSILHELLDMSASSTDAVRVTHKIDPKFDEE---EEVVIAVDSNLELA----TK 324
+ R++E + L S +++RV +I+ + E E+ I ++ +LA K
Sbjct: 579 TQREAELAAQRALKQKQESEAESLRVQEEINKRNAERIRREKEAIRINEAKKLAEELKAK 638
Query: 325 NELENMSTSSLFYITRDN----QVIDVEKAETIEEDLIXAKLRQIDEHSPAMERKRLPVX 492
LE ++ L ++ D Q+ VEK + + ++ID A R+ +P+
Sbjct: 639 GGLE-VNAEDLEHLDADKLRAMQIEQVEKQNKSMNERLRVIGKRIDHLERAYRREAIPLW 697
Query: 493 DED 501
+ED
Sbjct: 698 EED 700
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.8 bits (54), Expect = 7.9
Identities = 21/99 (21%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Frame = +1
Query: 139 SESKVL---KRTSNRKSEKSIL-HELLDMSASSTDAVRVTHKIDPKFDEEEEVVIAVDSN 306
S+ K+L + TS S+ +L + LD ++ S + + H++ + + VV+
Sbjct: 584 SDPKILLLDEATSALDSKSEVLVQKALDNASRSRTTIVIAHRLSTIRNADNIVVVNAGKI 643
Query: 307 LELATKNELENMSTSSLFYITRDNQVIDVEKAETIEEDL 423
+E + NEL +++ + + + E +EE+L
Sbjct: 644 VEQGSHNELLDLNGAYARLVEAQKLSGGEKDQEMVEEEL 682
>SPAC23H4.10c |thi4||thiamine-phosphate
dipyrophosphorylase/hydroxyethylthiazole kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -1
Query: 181 QIFYSMSVLKLYSPILKSIFCEQDHKPGRLSGQKILYHQEYFMSTLCPATRS 26
QI YS+ ++ S I E+ + G L G ++ H+E +ST C R+
Sbjct: 4 QIDYSLYLVTSSSLIAPGSTIERQVEEGILGGVTLVQHREKDISTKCFVERA 55
>SPBC8D2.12c |||mitochondrial DNA binding protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 25.8 bits (54), Expect = 7.9
Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Frame = +1
Query: 124 KSTLESESKVLKRTSNRKSEKSILHELLD--MSASSTDAVRVTHKIDPKFDEEEEVVIAV 297
K + KV K + ++LD + A + D V + + DE E +++
Sbjct: 158 KFLFSKKGKVEVNLPPEKRDSMKFEDVLDDAIEAGAEDIVNRPKEYIDEEDEGEFLILTE 217
Query: 298 DSNLELAT---KNELENMSTSSLFYITRDNQVIDVEKAETIEEDL 423
S+L +++ + S L +I + IDV +++ ED+
Sbjct: 218 PSSLNQVAHHFRSKNYEIKDSRLIHIPLEETAIDVPAKDSVREDI 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,438,223
Number of Sequences: 5004
Number of extensions: 43180
Number of successful extensions: 164
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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