Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_J18
(859 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 46 5e-06
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 42 1e-04
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 40 6e-04
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 37 0.003
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 35 0.013
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 35 0.017
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 34 0.022
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 29 0.64
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.0
SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces pom... 28 2.0
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 4.5
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 26 6.0
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 6.0
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 26 6.0
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 26 7.9
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 7.9
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 46.4 bits (105), Expect = 5e-06
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = +2
Query: 656 VAGVPNAGKSTVLRAISRARXNVAPYPFTTLXPXIGTI 769
+ G+PNAGKST+L ++ ++ V Y FTT+ P IGTI
Sbjct: 241 LVGLPNAGKSTLLNCLTASKSKVGEYEFTTIYPKIGTI 278
Score = 44.8 bits (101), Expect = 2e-05
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Frame = +3
Query: 162 TRDTVQHYVDSFRVRTVGGNGGDGCISFLSVWCKDHAXXXXXXXXXXXHV-IFKATNSVR 338
T T + D R+R GG+GG GC SF+ + + V + S
Sbjct: 24 TEATQPKFQDKIRIRIQGGDGGQGCSSFIKEKFRPYGPPDGGNGGDGGSVYVAVKPGSFN 83
Query: 339 SLNHCKAVIQAKPGEKGFNKDCSGKNAGHVIVNVPIGTIIK 461
+L+H + +A G G + G VI+ VP GT+I+
Sbjct: 84 NLSHLSQIHKASNGTNGKGGNRHGSCGKSVILYVPPGTVIR 124
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 41.5 bits (93), Expect = 1e-04
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +2
Query: 641 TGPRRVA--GVPNAGKSTVLRAISRARXNVAPYPFTTLXPXIGTILYD 778
+G RVA G P+ GKST+L AI++ + A Y FTTL G + YD
Sbjct: 60 SGDARVAFIGFPSVGKSTLLSAITKTKSATASYEFTTLTAIPGVLEYD 107
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 39.5 bits (88), Expect = 6e-04
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +2
Query: 620 LPSGGTLTGPRRVAGVPNAGKSTVLRAISRARXNVAPYPFTTLXPXIGTILY 775
LP+ T V G PN GKS+ + ++RA+ +V PY FTT +G Y
Sbjct: 161 LPAIDPNTRTLLVCGYPNVGKSSFMNKVTRAQVDVQPYAFTTKSLFVGHFDY 212
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 37.1 bits (82), Expect = 0.003
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 656 VAGVPNAGKSTVLRAISRA-RXNVAPYPFTTLXPXIGTILYDD 781
+ G+PN GKST RAI+++ N A YP+ T+ P + D
Sbjct: 25 IVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 35.1 bits (77), Expect = 0.013
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +2
Query: 662 GVPNAGKSTVLRAISRARXNVAPYPFTTLXP 754
G P++GKST+L A++ A +PFTT+ P
Sbjct: 11 GKPSSGKSTMLNALTDATAKTGNFPFTTIEP 41
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 34.7 bits (76), Expect = 0.017
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 662 GVPNAGKSTVLRAISRARXNVAPYPFTTLXPXIGTILYD 778
G P+ GKST++ ++ R A Y FTTL G + Y+
Sbjct: 70 GFPSVGKSTLMTQLTGTRSEAAAYEFTTLTTVPGVLQYN 108
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 34.3 bits (75), Expect = 0.022
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 656 VAGVPNAGKSTVLRAISRAR-XNVAPYPFTTLXP 754
+ G+PN GKST+ + +++ N A YPF T+ P
Sbjct: 50 IVGMPNIGKSTLFQILTKTNLGNPANYPFATIDP 83
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 29.5 bits (63), Expect = 0.64
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 662 GVPNAGKSTVLRAISRAR-XNVAPYPFTT 745
G PNAGKS+++ + + + NVAP P T
Sbjct: 317 GFPNAGKSSIINTLRKKKVCNVAPIPGET 345
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 537 LPPHPAPQQTSTPPCPNPQSL 475
LPP +TSTPP P P SL
Sbjct: 403 LPPLGNASRTSTPPVPTPPSL 423
>SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 27.9 bits (59), Expect = 2.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 455 NKKPKWSSDWGFGQGGVDVCCGAGWG 532
+KKP+ +WG+ +D C G+G
Sbjct: 199 HKKPELKPEWGWDAWNIDTWCPLGYG 224
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 490 KSPITRPFWFFIIVPIGTLTMTCPAFLPLQS 398
++ IT F+ I+ P+GTL TC FL + S
Sbjct: 1432 RARITTMFYGEILGPLGTLFFTCIPFLFINS 1462
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 26.2 bits (55), Expect = 6.0
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = -1
Query: 763 ADVRXQXREGIRCDVGPRARYGSQHGAL---PGIRDPSNPTWASERTSRW*MFVSPAAPN 593
+D R RE + P R S+ L P ++D S+P W +TSR +F S +P
Sbjct: 1313 SDYRELLRESQTLTLMPYDRTSSKEEPLNLFPKLKDTSSPLWNLVKTSR--LFQSSNSPL 1370
Query: 592 SAMS 581
+ S
Sbjct: 1371 NVAS 1374
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 563 GHRTGSGHSRVRGCRRNKHLPSG 631
GH + +G SR+ G N HLPSG
Sbjct: 85 GHSSYAG-SRISGGNSNSHLPSG 106
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 262 LHHTLRKDMQPSPPFPPTV 206
L+H+L+ M PS P PP V
Sbjct: 166 LNHSLQNSMPPSTPTPPPV 184
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 549 KFFLTDTEQAPDIAEFGAAGETNIYHLEVRSLAHVGLLGSRM 674
KF+ D ++ P + FG N+ H + S++ GS++
Sbjct: 1090 KFYAGDEKKIPIVEYFGGVPPVNVSHKSLESVSVTEEAGSKV 1131
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 537 LPPHPAPQQTSTPPCPNPQSL 475
+ P PAP Q + PP P PQ+L
Sbjct: 240 IAPVPAPNQAALPPIP-PQAL 259
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,123,074
Number of Sequences: 5004
Number of extensions: 64349
Number of successful extensions: 203
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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