Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_J16
(844 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0768 - 22988119-22988223,22988337-22988558,22988645-229888... 121 8e-28
05_03_0079 + 8212648-8212724,8212844-8212993,8213211-8213351,821... 51 1e-06
01_05_0265 + 20188160-20188211,20188291-20189019,20189103-201892... 41 0.001
11_04_0331 + 16456577-16456579,16456664-16456911,16457625-164578... 36 0.040
12_01_0997 - 10114571-10114864,10115422-10115795,10115910-10116144 30 2.7
01_06_1346 - 36478844-36479266,36479369-36479728,36479820-364801... 29 3.5
11_06_0028 - 19393700-19393899,19394058-19394116,19394437-193945... 29 4.6
05_05_0070 + 22148595-22148907,22148988-22149104,22149196-221493... 29 4.6
12_01_1001 - 10145663-10147006 29 6.1
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 29 6.1
08_02_1247 + 25578291-25578305,25579084-25579197,25579497-255796... 29 6.1
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476... 29 6.1
03_05_0798 + 27798095-27798190,27798325-27798366,27799152-277991... 28 8.1
>12_02_0768 -
22988119-22988223,22988337-22988558,22988645-22988810,
22989176-22989181,22989281-22989453,22989737-22989928,
22990034-22990211,22990302-22990444,22990666-22990755,
22990869-22990991,22991391-22991568,22992213-22992442,
22992557-22992616,22992731-22992798,22992908-22992953
Length = 659
Score = 121 bits (291), Expect = 8e-28
Identities = 71/192 (36%), Positives = 108/192 (56%), Gaps = 3/192 (1%)
Frame = +2
Query: 107 DYTADKESFKNFFVDFCQTDDEGKKYFKYAEQLTKVAHREQIAFEVDLDDLH---EMNED 277
D+ A++ K+F +F E K Y L VA+R+ A +++LDDL + +++
Sbjct: 10 DFAAERALAKDFLANFAGPRGEPK----YLNILQDVANRKIRAVQIELDDLFHYKDADDE 65
Query: 278 LTEAVKQNTRRYTNMVSDVVYEMLPDYKFKEVVAKDSLDVYIEHRIMLEARNHRIPGEMR 457
+ V +NT+RY + +D + E++P+ V +D D+ + R+ E + G
Sbjct: 66 FLQRVTENTKRYIGIFADAIDELMPESTEAYAVDEDR-DILMTQRVD-EGADGGADGT-- 121
Query: 458 DPRNRYPPELIRRFEVYFKDLSTSKSVPIREVKAEHIGKLVTVRGIVTRCTDVKPLLVVA 637
DP R PPE+ R FEVY K S + IR+VKA +IG+LV + GIVTRC+DVKPL+ VA
Sbjct: 122 DPLQRMPPEIRRFFEVYIKAFSKVTPLTIRQVKASNIGQLVKISGIVTRCSDVKPLMQVA 181
Query: 638 TYSCSACGAXTY 673
Y+C CG Y
Sbjct: 182 VYTCEECGFEIY 193
>05_03_0079 +
8212648-8212724,8212844-8212993,8213211-8213351,
8213658-8213820,8213901-8214094,8214174-8214369,
8214462-8214539,8214933-8215162,8215574-8215688,
8215878-8215952,8216032-8216172,8216309-8216512,
8216586-8216747,8216787-8216794,8217099-8217223,
8217316-8217438,8218177-8218307,8218527-8218658
Length = 814
Score = 50.8 bits (116), Expect = 1e-06
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Frame = +2
Query: 281 TEAVKQNTRRYTNMVSDVVYEMLPDYKFKEVVAKDSLDVYIEHRIMLEARNHRIPGEMRD 460
TE +R T M D + M +F +V+ K + Y+ L R E R
Sbjct: 39 TELEAMRSRESTTMYVDFAHVM----RFNDVLQKAISEEYLRFEPYLRNACKRFVMEQRT 94
Query: 461 PRNRYPPELIRRFEVYFKDLSTS-KSVP----IREVKAEHIGKLVTVRGIVTRCTDVKPL 625
NR P I + KD++ + ++P +RE+ IGKL V G+VTR ++V+P
Sbjct: 95 GENRAP---IISDDSPNKDINIAFYNIPMLKRLRELGTAEIGKLTAVMGVVTRTSEVRPE 151
Query: 626 LVVATYSCSACG 661
L+ T+ C CG
Sbjct: 152 LLQGTFKCLDCG 163
>01_05_0265 +
20188160-20188211,20188291-20189019,20189103-20189231,
20189857-20189938,20190034-20190166,20190269-20190340,
20190478-20190573,20190651-20190764,20190838-20191050,
20191144-20191242,20191328-20191488,20191589-20191685,
20191828-20191989,20192068-20192148,20192242-20192320,
20192414-20192550,20192638-20192688,20192776-20192844,
20193583-20193700,20194142-20194197
Length = 909
Score = 40.7 bits (91), Expect = 0.001
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Frame = +2
Query: 356 YKFKEVVAKDSLDV----YIEHRIMLEARNHRIPGEMRDPRNRYPPELIRRFEVYF-KDL 520
++ E+ +SLDV +H L + R P E+ + +L+ R E F K +
Sbjct: 182 HRILELEGGESLDVNAHDVFDHDPDLYGKMVRYPLEVLAIFDIVLMDLVARIEPLFEKHI 241
Query: 521 ST-----SKSVPIREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSACG 661
T SV +R + I K+V+++G++ RC+ V P L A + C CG
Sbjct: 242 QTRIYNLKSSVCLRNLNPSDIEKMVSIKGMIIRCSSVIPELKEAVFRCLVCG 293
>11_04_0331 +
16456577-16456579,16456664-16456911,16457625-16457812,
16458293-16458489,16458579-16458768,16458865-16459084,
16459169-16459376,16459508-16459642,16459725-16459916,
16459999-16460171,16460266-16460454,16460539-16460655,
16460734-16460818,16460900-16461052,16461135-16461260,
16461391-16461573,16461823-16461984,16462098-16462214
Length = 961
Score = 35.9 bits (79), Expect = 0.040
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 542 IREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSACG 661
IR ++ H+ ++ + G+VTR + V P L + CS CG
Sbjct: 345 IRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKFDCSKCG 384
>12_01_0997 - 10114571-10114864,10115422-10115795,10115910-10116144
Length = 300
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -2
Query: 564 CSALTSLIGTLFDVDKSLKYTSNLLMSSGGYLFLGSLISPGILWFLAS-NIILCSMYT 394
C+ L L L K + T +++ G+ FLG + GIL LAS N ++C +YT
Sbjct: 21 CNILPRLPFKLTTRLKVISSTPDIVGIPSGFDFLGCCLENGILSLLASTNGLVCILYT 78
>01_06_1346 -
36478844-36479266,36479369-36479728,36479820-36480110,
36480193-36480267,36482292-36482446,36482549-36482665,
36482757-36482976
Length = 546
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 514 FEVHFKSPDELWWVSVPRIP 455
F F DE WW+ VPR+P
Sbjct: 218 FRAAFHRRDEKWWLPVPRVP 237
>11_06_0028 -
19393700-19393899,19394058-19394116,19394437-19394521,
19395305-19395474,19397534-19397613,19398288-19398392,
19399268-19399308,19399400-19399438,19400473-19400818,
19401762-19401815,19402249-19402350
Length = 426
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -1
Query: 403 NVYIQGILCYYLFEFVIRQHFINHV*HHISVSSGILFDCLSQIFIHL 263
+V++ LC Y F + F+N V +S+ + +LF CLS + I +
Sbjct: 60 HVWVVSHLCPYGAIFFLNSIFMNPVEGLVSIIALMLFSCLSALLIQV 106
>05_05_0070 +
22148595-22148907,22148988-22149104,22149196-22149350,
22149987-22150061,22150179-22150469,22150942-22151292,
22151390-22151794
Length = 568
Score = 29.1 bits (62), Expect = 4.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 514 FEVHFKSPDELWWVSVPRIP 455
F + F DE WW+ VPR+P
Sbjct: 249 FMLTFHRRDEKWWLPVPRVP 268
>12_01_1001 - 10145663-10147006
Length = 447
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -2
Query: 513 LKYTSNLLMSSGGYLFLGSLISPGILWFLAS-NIILCSMYT 394
L T +++ G+ FLG + GIL LAS N ++C +YT
Sbjct: 89 LSSTPDIVGIPSGFDFLGCCLENGILSLLASTNGLVCILYT 129
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 28.7 bits (61), Expect = 6.1
Identities = 26/124 (20%), Positives = 56/124 (45%), Gaps = 1/124 (0%)
Frame = +2
Query: 38 TFVISI*RQQLFE*HISNIMAMRDYTADKESFKNFFVDFCQTDDEGKKYFKYAEQLTKVA 217
+F+ ++ L E + +++A+ +++ FF +T + ++F + V
Sbjct: 248 SFITEFFKEYLKENTLDDLIALLKKGKMEDNLLEFFPSAKRTSEALSEHFTKEGLTSLVE 307
Query: 218 HREQIAFEVDLDDLHEMNEDLTEAVKQNTRRYTNMVSDVVYEMLPDYKFKEV-VAKDSLD 394
+ E+ FEV L ++ LT N + V++ V + + D KF ++ V + D
Sbjct: 308 YNEKKMFEVKLKEI-----KLTLTTMINEEAEISEVTEAVKQQVKDAKFPDIEVVRMLWD 362
Query: 395 VYIE 406
V +E
Sbjct: 363 VLME 366
>08_02_1247 +
25578291-25578305,25579084-25579197,25579497-25579628,
25579726-25579854,25580024-25580421,25580503-25580602,
25580734-25580793,25580881-25580967,25581058-25581186,
25581260-25581559
Length = 487
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +2
Query: 206 TKVAHREQIAFEVDLDDLHEMNEDLTEAVKQNTRRYTNMVSDVVYEM 346
TK+AH EQ+ F +++ + M+ + +++ + T+M+ Y +
Sbjct: 275 TKMAHEEQLCFWINIHNALVMHAFMAYGLQEKRMKNTDMILKAAYNV 321
>02_03_0026 - 14045653-14045874,14047023-14047215,14047518-14047618,
14050145-14050272,14050409-14050502,14050749-14051237,
14052622-14052915,14053602-14053732,14053829-14055440,
14055539-14055651,14055902-14056933,14057023-14057145,
14057250-14057688
Length = 1656
Score = 28.7 bits (61), Expect = 6.1
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = +2
Query: 191 YAEQLTKVAHREQIAFEVDLDDLHEMNEDLTEAVKQNTRRYTNMVSDVVYEMLPDYKFKE 370
Y+ T A EQ+ D LH M D+TE +DV+ E++ +
Sbjct: 1066 YSRGNTNPAAVEQMVLRDIRDLLHSMGNDITEYGLLEISDIGERTNDVMTEIIEE--LNV 1123
Query: 371 VVAKDSLDVY 400
+V +D LD+Y
Sbjct: 1124 LVDQDHLDIY 1133
>03_05_0798 +
27798095-27798190,27798325-27798366,27799152-27799190,
27799238-27799420
Length = 119
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 474 THQSSSGDLKCTSKTCQHRKVYLSEKLRL 560
TH S D+ S C+H K YL KL+L
Sbjct: 21 THLGLSSDIISKSFHCKHGKAYLFNKLKL 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,295,149
Number of Sequences: 37544
Number of extensions: 334021
Number of successful extensions: 929
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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