Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_J16
(844 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016427-3|AAB65356.1| 730|Caenorhabditis elegans Yeast mcm (li... 136 1e-32
Z81039-5|CAB02770.1| 812|Caenorhabditis elegans Hypothetical pr... 39 0.005
Z29095-13|CAA82357.1| 810|Caenorhabditis elegans Hypothetical p... 38 0.012
Z22181-15|CAA80191.1| 810|Caenorhabditis elegans Hypothetical p... 38 0.012
AF326940-1|AAG49390.1| 810|Caenorhabditis elegans replication l... 38 0.012
AL023828-7|CAA19452.1| 881|Caenorhabditis elegans Hypothetical ... 37 0.016
Z81533-12|CAB04333.2| 356|Caenorhabditis elegans Hypothetical p... 30 1.8
AF016452-15|AAX88811.1| 349|Caenorhabditis elegans Hypothetical... 30 2.4
AF016452-14|AAB66020.1| 409|Caenorhabditis elegans Hypothetical... 30 2.4
AC025716-11|AAK39605.1| 823|Caenorhabditis elegans Yeast mcm (l... 30 2.4
Z47069-1|CAA87338.1| 964|Caenorhabditis elegans Hypothetical pr... 29 3.1
AC084152-1|AAM69074.2| 332|Caenorhabditis elegans Hypothetical ... 29 3.1
Z81132-14|CAB03432.3| 378|Caenorhabditis elegans Hypothetical p... 29 5.5
U80952-3|AAB38093.1| 279|Caenorhabditis elegans Hypothetical pr... 29 5.5
AF077529-4|AAC26255.2| 783|Caenorhabditis elegans Hypothetical ... 29 5.5
U40424-5|AAA81461.2| 638|Caenorhabditis elegans Hypothetical pr... 28 7.2
U53339-4|AAA96200.1| 298|Caenorhabditis elegans Hypothetical pr... 28 9.5
>AF016427-3|AAB65356.1| 730|Caenorhabditis elegans Yeast mcm
(licensing factor) relatedprotein 7 protein.
Length = 730
Score = 136 bits (330), Expect = 1e-32
Identities = 70/200 (35%), Positives = 119/200 (59%), Gaps = 9/200 (4%)
Frame = +2
Query: 107 DYTADKESFKNFFVDFCQTDDEGK-KYFKYAEQLTKVAHREQIAFEVDLDDLHEMNE--- 274
D+ A+K ++FF ++ +++G K F Y +Q+ ++A R++ A V++D + E +
Sbjct: 9 DWAAEKTKIRSFFDEYYVDNEDGSGKAFPYRDQVFEIARRDKQAIVVNVDHIKESDIPDA 68
Query: 275 -DLTEAVKQNTRRYTNMVSDVVYEMLPDYKF-KEVVAKDSLDVYIEHRIMLEARNHRIPG 448
+L+EA+ NT+RY + D + +M+ DY K+ D+LD Y+ R+ ++ RN
Sbjct: 69 LELSEAITSNTKRYEVLFKDTISDMIQDYLGDKQAPVIDALDAYMFQRLHMD-RNEGAAN 127
Query: 449 E---MRDPRNRYPPELIRRFEVYFKDLSTSKSVPIREVKAEHIGKLVTVRGIVTRCTDVK 619
E ++D R +YPP+L++RFEVYF + +R +KA IG LV+++G+V R T+VK
Sbjct: 128 EEVSLQDKRKKYPPQLLQRFEVYFTTDDAAHETCVRNIKATEIGHLVSMKGVVIRATEVK 187
Query: 620 PLLVVATYSCSACGAXTYXP 679
P + V TY+C C A Y P
Sbjct: 188 PCVEVMTYTCDTCAAEVYQP 207
>Z81039-5|CAB02770.1| 812|Caenorhabditis elegans Hypothetical
protein C25D7.6 protein.
Length = 812
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +2
Query: 497 FEVYFKDLSTSKSVPIREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSA 655
F V F+ + V R +K+ ++G LV GIVT+C+ V+ L+ + + C A
Sbjct: 103 FHVGFEGTFGERHVNPRTLKSSYLGNLVCCEGIVTKCSTVRQKLLTSVHYCPA 155
>Z29095-13|CAA82357.1| 810|Caenorhabditis elegans Hypothetical
protein ZK632.1a protein.
Length = 810
Score = 37.5 bits (83), Expect = 0.012
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Frame = +2
Query: 356 YKFKEVVAKD-SLDVYIEHRIMLEARNHRIPGEMRDPRNRYPPELIRRFEVYFKDLSTSK 532
YKF +A L Y + M EA H + D R ++ ++ ++Y +
Sbjct: 63 YKFSNNLATTIELQYYRVYPFMCEAL-HLATLDACDESERQ--QMFKK-QLYVSLFNLDA 118
Query: 533 SVPIREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSACGAXT 670
+RE+ A+ +G LV + G + R V P L A + C CG T
Sbjct: 119 KTKVRELSADKVGGLVRIAGQIVRTHPVHPELSRACFVCEDCGVTT 164
>Z22181-15|CAA80191.1| 810|Caenorhabditis elegans Hypothetical
protein ZK632.1a protein.
Length = 810
Score = 37.5 bits (83), Expect = 0.012
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Frame = +2
Query: 356 YKFKEVVAKD-SLDVYIEHRIMLEARNHRIPGEMRDPRNRYPPELIRRFEVYFKDLSTSK 532
YKF +A L Y + M EA H + D R ++ ++ ++Y +
Sbjct: 63 YKFSNNLATTIELQYYRVYPFMCEAL-HLATLDACDESERQ--QMFKK-QLYVSLFNLDA 118
Query: 533 SVPIREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSACGAXT 670
+RE+ A+ +G LV + G + R V P L A + C CG T
Sbjct: 119 KTKVRELSADKVGGLVRIAGQIVRTHPVHPELSRACFVCEDCGVTT 164
>AF326940-1|AAG49390.1| 810|Caenorhabditis elegans replication
licensing factor MCM2/3/5-type protein protein.
Length = 810
Score = 37.5 bits (83), Expect = 0.012
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Frame = +2
Query: 356 YKFKEVVAKD-SLDVYIEHRIMLEARNHRIPGEMRDPRNRYPPELIRRFEVYFKDLSTSK 532
YKF +A L Y + M EA H + D R ++ ++ ++Y +
Sbjct: 63 YKFSNNLATTIELQYYRVYPFMCEAL-HLATLDACDESERQ--QMFKK-QLYVSLFNLDA 118
Query: 533 SVPIREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSACGAXT 670
+RE+ A+ +G LV + G + R V P L A + C CG T
Sbjct: 119 KTKVRELSADKVGGLVRIAGQIVRTHPVHPELSRACFVCEDCGVTT 164
>AL023828-7|CAA19452.1| 881|Caenorhabditis elegans Hypothetical
protein Y17G7B.5a protein.
Length = 881
Score = 37.1 bits (82), Expect = 0.016
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 542 IREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSACG 661
IR ++ H+ L+ G+VT + + P L V Y C ACG
Sbjct: 270 IRMLRQVHLNMLIRTAGVVTIASGILPQLAVVKYDCVACG 309
>Z81533-12|CAB04333.2| 356|Caenorhabditis elegans Hypothetical
protein F36G9.1 protein.
Length = 356
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = -2
Query: 624 SGFTSVHRVTIPRTVTSFPICSALTSLIGTLFDVDKSL-KYTSNLLMSSGGYLFLGSLIS 448
S F SVH +TIPR +C + + + + L + NL SS G L +
Sbjct: 115 SFFVSVHSITIPRIFQKLAVCFGVAMAVLRVIILKYPLNRRGQNLKRSSSGICILLIVCI 174
Query: 447 PGI-LWF 430
P I WF
Sbjct: 175 PHIPFWF 181
>AF016452-15|AAX88811.1| 349|Caenorhabditis elegans Hypothetical
protein T05H4.15c protein.
Length = 349
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/54 (29%), Positives = 32/54 (59%)
Frame = +2
Query: 224 EQIAFEVDLDDLHEMNEDLTEAVKQNTRRYTNMVSDVVYEMLPDYKFKEVVAKD 385
EQ++F + D L EM++D+++ TRR T DV+ +++ ++ V+ +D
Sbjct: 8 EQLSFGLFGDLLDEMHQDISDQPTLATRRATQKEFDVLCKLIGGFEKWSVLNED 61
>AF016452-14|AAB66020.1| 409|Caenorhabditis elegans Hypothetical
protein T05H4.15a protein.
Length = 409
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/54 (29%), Positives = 32/54 (59%)
Frame = +2
Query: 224 EQIAFEVDLDDLHEMNEDLTEAVKQNTRRYTNMVSDVVYEMLPDYKFKEVVAKD 385
EQ++F + D L EM++D+++ TRR T DV+ +++ ++ V+ +D
Sbjct: 8 EQLSFGLFGDLLDEMHQDISDQPTLATRRATQKEFDVLCKLIGGFEKWSVLNED 61
>AC025716-11|AAK39605.1| 823|Caenorhabditis elegans Yeast mcm
(licensing factor) relatedprotein 4 protein.
Length = 823
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/52 (21%), Positives = 27/52 (51%)
Frame = +2
Query: 503 VYFKDLSTSKSVPIREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSAC 658
+ + + K+ +R + + +L+T+ G+VTR + + P + + C+ C
Sbjct: 221 IELRPFNAQKTRNMRGLNPNDVDQLITISGMVTRTSSLIPEMRSGYFQCAVC 272
>Z47069-1|CAA87338.1| 964|Caenorhabditis elegans Hypothetical
protein F36G3.1 protein.
Length = 964
Score = 29.5 bits (63), Expect = 3.1
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Frame = +2
Query: 272 EDLTEAVKQ-NTRRYTNMVSDVVYEMLPDYKFKEVVAKDSLDVYIEHRIMLEARNHRIPG 448
+DL E VK + + N V + YE LPD + +AK + V E+ I ++ ++
Sbjct: 410 KDLNENVKAFDAEHHENSVLE--YEQLPDVFSEITIAKTPIPVVHENSISGVSKESQVSF 467
Query: 449 EMRDPRNRYPPELIRRFEVYFKDLSTSKSVPIREVKAEHI 568
+N P I EV + ++P + +
Sbjct: 468 NQEAVQNELMPTHIISDEVETSSTTADNNIPFSDCSTHKV 507
>AC084152-1|AAM69074.2| 332|Caenorhabditis elegans Hypothetical
protein Y102A11A.9 protein.
Length = 332
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/72 (22%), Positives = 35/72 (48%)
Frame = +2
Query: 122 KESFKNFFVDFCQTDDEGKKYFKYAEQLTKVAHREQIAFEVDLDDLHEMNEDLTEAVKQN 301
KE N+ + +G+++ K +E +K + + LD L + EDL+E K+N
Sbjct: 219 KEVKNNYASMLEKNKKKGEEFIKQSEN-SKAVVEKTVQISTVLDSLQKEREDLSEIRKKN 277
Query: 302 TRRYTNMVSDVV 337
++ + +++
Sbjct: 278 EQKIEGLSQELI 289
>Z81132-14|CAB03432.3| 378|Caenorhabditis elegans Hypothetical
protein T26E4.3 protein.
Length = 378
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +2
Query: 188 KYAEQLTKVAHREQIAFEVDLDDLHEMNEDLTEAVKQNTRRYT 316
+Y + + +H +I+ V DDL+ +NE T+++K NT YT
Sbjct: 252 EYLVDIYEKSH-SRISVVVLGDDLNFVNEVFTQSIKSNTSSYT 293
>U80952-3|AAB38093.1| 279|Caenorhabditis elegans Hypothetical
protein F54H5.3 protein.
Length = 279
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 233 AFEVDLDDLHEMNEDLTEAVKQNTRRYTNMV 325
A EVDLD ++ +L+E VK+ +Y+N+V
Sbjct: 226 AVEVDLDRQAQLVNELSERVKRGEIQYSNLV 256
>AF077529-4|AAC26255.2| 783|Caenorhabditis elegans Hypothetical
protein C09E8.1a protein.
Length = 783
Score = 28.7 bits (61), Expect = 5.5
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 300 IPEDTLIWCQTWFMKCCLIT 359
+P +I C TW CC++T
Sbjct: 711 VPPLLIIMCNTWIRSCCIVT 730
>U40424-5|AAA81461.2| 638|Caenorhabditis elegans Hypothetical
protein C24A3.1 protein.
Length = 638
Score = 28.3 bits (60), Expect = 7.2
Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Frame = +2
Query: 197 EQLTKVAHREQIAFEVDLDDLHEMNEDLTEAVKQNTRRYTNMVSDVVYEMLPDYKFKEVV 376
++L + ++ +A + +++L + + E + + TRR + ++ + E+ +
Sbjct: 241 QRLQDMIRQQDLARQDIMNNLSKKGDVDKEKLNEETRRLNDKINLITSEVTKKMTENQQK 300
Query: 377 AKDSLDVYIE-HRIMLEARNHRI---PGEMRDPRNRYPPELIRRFEVYFKDLSTSKS 535
AKD + I M+ A++ RI EMR EL + E+ K +++ K+
Sbjct: 301 AKDDFNSRISVLESMIRAQSERIVANENEMRHSFEAKLAELSGQLELAMKQITSEKA 357
>U53339-4|AAA96200.1| 298|Caenorhabditis elegans Hypothetical
protein F58A6.5 protein.
Length = 298
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 12/64 (18%)
Frame = +2
Query: 245 DLDDLHEMNEDLTEAVKQNTRRYTNMVSDVVYEM------LPDY------KFKEVVAKDS 388
D D+ +E ED+T AVK T+++ DV+ L +Y KF E V + +
Sbjct: 4 DADNGYERLEDITNAVKNEGTEVTHVLRDVIRNYSDLGHDLQEYYDKNLRKFPETVERTA 63
Query: 389 LDVY 400
DVY
Sbjct: 64 NDVY 67
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,105,404
Number of Sequences: 27780
Number of extensions: 320146
Number of successful extensions: 1017
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -