Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_J14
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po...    31   0.20 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.61 
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   2.5  
SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr 2|...    27   3.3  
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe...    27   3.3  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    27   4.3  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   5.7  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   7.6  

>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 471

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 270 QEFSSCCLLSMQRS*WSARELCQHKFM 350
           ++F SCCL       WSA+EL QH F+
Sbjct: 234 RDFVSCCLDLNPNMRWSAKELLQHPFI 260


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
 Frame = +1

Query: 247 LRDSQCGTKNSVPAVCCPCNAADGQQGNCVNINSCPYVLQLLKNPNEANLNYVRG-SVCQ 423
           L  + C T  SVP    P  +      NC    S PY    + +      N     SV  
Sbjct: 445 LATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPY 504

Query: 424 GSEQQSICCVTAPQSTAVTTTP 489
            S   +    T   ST VT+TP
Sbjct: 505 TSTPVTSSNYTISSSTPVTSTP 526



 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/37 (32%), Positives = 14/37 (37%)
 Frame = +1

Query: 247 LRDSQCGTKNSVPAVCCPCNAADGQQGNCVNINSCPY 357
           L  + C T  SVP    P  +      NC    S PY
Sbjct: 422 LTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPY 458


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 337 NINSCPYVLQLLKNPNEANLN 399
           +INS PY   +++NP+E NL+
Sbjct: 305 SINSVPYTSNIVENPSEDNLS 325


>SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 609 CGRTTNDFVSDGYVPAATLPFRIRGGGSHLALAGVHPLRS 490
           CG T+ D  +    P   L F+  G   + A  G H LR+
Sbjct: 49  CGLTSEDLEAGELPPVDVLTFKKSGKPYYFAFGGCHRLRA 88


>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 450 CYCATVDGSDHDPQTEAGARLP 515
           CY A  D  DH+P+TE  +  P
Sbjct: 138 CYLAYPDSRDHEPRTEGESSSP 159


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 364 QLLK-NPNEANLNYVRGSVCQGSEQQSICCVTAPQSTAVTTTPRPKR 501
           QLLK NP +    Y+RGS   G    S  C  A  S +V +   P R
Sbjct: 342 QLLKPNPTQPYF-YLRGSFDTGHSASSSICSAAVDSESVNSADFPHR 387


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 376 NPNEANLNYVRGSVCQGSEQQSICCVTAP 462
           +P+ A LN++  S C     QS+ C T P
Sbjct: 285 HPDPARLNFLSFSFCVNPMNQSLDCNTTP 313


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 493 PKRVHACQSEMTATPPNPEGKCCG 564
           P+ + A Q  M  T   PEG+ CG
Sbjct: 497 PRSLQASQFGMLCTSDTPEGEACG 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,545,803
Number of Sequences: 5004
Number of extensions: 77299
Number of successful extensions: 224
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)