Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_J13
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    63   6e-11
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p...    27   4.6  

>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 62.9 bits (146), Expect = 6e-11
 Identities = 39/91 (42%), Positives = 52/91 (57%), Gaps = 10/91 (10%)
 Frame = +1

Query: 148 TFNLVHRSQRDPLAADETAPQRVLVPVNTIIPPTK-----DKDTEY--TPEQRKEEQRKY 306
           TF+LVHRSQRDP   DE A +RVLV   T+    +       D EY  T    + E   Y
Sbjct: 14  TFHLVHRSQRDPQYHDENATERVLVSAETLNKTARRLNRQTLDEEYGSTIRPNEGEAANY 73

Query: 307 GIYYDD-DYNYLQHLKD--TKEVTLVLQPKT 390
           GIY+DD +Y+Y+QHL++   ++ T V  P T
Sbjct: 74  GIYFDDTEYDYMQHLRNIGNEDATWVEAPAT 104


>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 232

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 292 EQRKYGIYYDDDYNYLQHLKDTKEVTLVLQPKTPH 396
           E  K  IYYDDD   ++ +    ++ L+L  + PH
Sbjct: 46  ESYKNVIYYDDDVVLVRDMFPKSKMHLLLMTRDPH 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,749
Number of Sequences: 5004
Number of extensions: 48960
Number of successful extensions: 121
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)