Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_J13
         (872 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1180 + 26727171-26727239,26728782-26729642                       29   3.7  
02_05_0066 - 25546545-25546999,25547104-25547199,25547294-25547441     29   3.7  
03_06_0720 + 35739383-35739391,35739802-35740275,35740695-357411...    28   8.5  
02_02_0240 + 8196140-8198248,8198381-8198650                           28   8.5  

>12_02_1180 + 26727171-26727239,26728782-26729642
          Length = 309

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 235 IIPPTKDKDTEYTPEQRKEEQRKY 306
           +I P KDKD E   EQ +EE+  Y
Sbjct: 120 LILPKKDKDEELVQEQEQEEEENY 143


>02_05_0066 - 25546545-25546999,25547104-25547199,25547294-25547441
          Length = 232

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +1

Query: 148 TFNLVHRSQRDPLAADETAPQRVLVPVNTIIPPTKDKDTEYTPEQRKEEQRKYGIYYDDD 327
           T  +  RS R PLA       +V VP    IP  K K  + +  + K EQ+   +  +D 
Sbjct: 147 TERVAFRSDR-PLAVSAPGGDKVRVPYKVTIPLRKVKAAKPSENKHKPEQKYIEVVTNDG 205

Query: 328 YNY 336
           + +
Sbjct: 206 FEF 208


>03_06_0720 +
           35739383-35739391,35739802-35740275,35740695-35741122,
           35741273-35741351
          Length = 329

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -2

Query: 613 QNQNLHPKRPLLPDPDRGVNPVEQLY*VNQHPLQIQKRTPNWAASDVL 470
           + Q  H  RPL P P    NP E+ +   Q P +  K     AASD +
Sbjct: 204 RQQQQHSFRPLSPPPPSSSNPSERAWQQQQQPQRAGKSPA--AASDAM 249


>02_02_0240 + 8196140-8198248,8198381-8198650
          Length = 792

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 190 ADETAPQRVLVPVNTIIPPTKDKDTEYTPE 279
           AD +AP RV  P   ++PP  +  T + PE
Sbjct: 150 ADHSAPFRVPPPTKVLVPPKAELYTVHLPE 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,861,471
Number of Sequences: 37544
Number of extensions: 296488
Number of successful extensions: 690
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)