Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_J13
         (872 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81128-3|CAB03401.1|  410|Caenorhabditis elegans Hypothetical pr...    54   1e-07
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in...    29   3.3  
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in...    29   3.3  
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in...    29   3.3  
U41539-3|AAB52496.1|  203|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U29380-10|AAO38582.1|  454|Caenorhabditis elegans Hypothetical p...    28   7.6  
U29380-9|AAA68745.1|  472|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>Z81128-3|CAB03401.1|  410|Caenorhabditis elegans Hypothetical
           protein T23D8.3 protein.
          Length = 410

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
 Frame = +1

Query: 235 IIPPTKDKDTEYTPEQRK-EEQRKYGIYYDDDYNYLQHLKDTKE 363
           ++P  +++   + P Q   EEQ+KYG+YYDDDY+YLQH++   E
Sbjct: 18  LVPDNRERSERFKPTQEHLEEQQKYGVYYDDDYDYLQHMRAVNE 61


>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform d protein.
          Length = 2350

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +1

Query: 211 RVLVPVNTIIPPTKDKDTEYTPEQRKEEQRKYGIYYDDDY--NYLQHLKDTKE 363
           R+   VN +    +D + EY   QR+ E+++  I Y DD   N  + L D +E
Sbjct: 680 RLKSEVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRNIQKDLDDLRE 732


>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform b protein.
          Length = 2117

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +1

Query: 211 RVLVPVNTIIPPTKDKDTEYTPEQRKEEQRKYGIYYDDDY--NYLQHLKDTKE 363
           R+   VN +    +D + EY   QR+ E+++  I Y DD   N  + L D +E
Sbjct: 753 RLKSEVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRNIQKDLDDLRE 805


>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform a protein.
          Length = 2396

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +1

Query: 211 RVLVPVNTIIPPTKDKDTEYTPEQRKEEQRKYGIYYDDDY--NYLQHLKDTKE 363
           R+   VN +    +D + EY   QR+ E+++  I Y DD   N  + L D +E
Sbjct: 753 RLKSEVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRNIQKDLDDLRE 805


>U41539-3|AAB52496.1|  203|Caenorhabditis elegans Hypothetical
           protein K05G3.1 protein.
          Length = 203

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 229 NTIIPPTKDKDTEYTPEQRKEEQRKYGIYYDDDYNYLQHLKDTKEVTLVL 378
           N  I  T+DK+      ++ E+     IY+D +++Y++   DTK   + L
Sbjct: 45  NLTITVTEDKEKAKRVLEKFEKHPTVPIYFDSEHSYIRLKNDTKVAAIQL 94


>U29380-10|AAO38582.1|  454|Caenorhabditis elegans Hypothetical
           protein ZK546.14b protein.
          Length = 454

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +1

Query: 205 PQRVLVPVNTIIPPTKDKDTEYTPEQRKEEQRKYGIYYDDDYNYLQHLKDTKEVTLVLQP 384
           PQ+V+ PV       K+K+     +Q+K++++      +DD +  +  ++T E     Q 
Sbjct: 80  PQKVVAPVKRPADQNKNKEKVVKKDQKKQDKKADSDSEEDDSSDDEEKEETDEPVAKKQK 139

Query: 385 K 387
           K
Sbjct: 140 K 140


>U29380-9|AAA68745.1|  472|Caenorhabditis elegans Hypothetical
           protein ZK546.14a protein.
          Length = 472

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +1

Query: 205 PQRVLVPVNTIIPPTKDKDTEYTPEQRKEEQRKYGIYYDDDYNYLQHLKDTKEVTLVLQP 384
           PQ+V+ PV       K+K+     +Q+K++++      +DD +  +  ++T E     Q 
Sbjct: 98  PQKVVAPVKRPADQNKNKEKVVKKDQKKQDKKADSDSEEDDSSDDEEKEETDEPVAKKQK 157

Query: 385 K 387
           K
Sbjct: 158 K 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,833,527
Number of Sequences: 27780
Number of extensions: 284609
Number of successful extensions: 772
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)