Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_J12
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1...    29   0.64 
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   3.4  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   6.0  

>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 418 NRIRKKMQWKLSLLKYRIAVNILLYLMMV 504
           NR+RKKM WK   ++  I + I++ L+++
Sbjct: 82  NRVRKKMWWKDMRMRLCIIIGIIILLVVI 110


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -3

Query: 422 LFHFYSTSNPQCTFYYIIIHSNCSSTSFKCNFAFNIPYNFFYFSLTECTLV 270
           L  FY  SNP  TF   I  S C  T+    F+++   N  YF ++   L+
Sbjct: 628 LLSFYEYSNPSATF---IDFSFCPLTTIDPAFSYS---NLVYFDISHAKLI 672


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 13/105 (12%)
 Frame = -3

Query: 569 LTFIEMPSTLQAKR*SPQCCDVTIIKYNSILTAIL-YFSNDSF-----H-CIFFRILFHF 411
           L+F  +P T            + +  Y   L+ +  +F ND F     H   FF  +  +
Sbjct: 176 LSFPYLPPTPAEDEHKKPPLKIQLPPYEEALSIVSQFFMNDHFLVHIHHPASFFEKMHMY 235

Query: 410 YSTSNPQCTFYYIIIHSNCSSTSF------KCNFAFNIPYNFFYF 294
           Y T      F+++++ + C   ++        N+ ++  Y ++Y+
Sbjct: 236 YKTGKTDNNFHFLLVATLCLGYTYMPDESPSANYPYHEAYEYYYY 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,113,156
Number of Sequences: 5004
Number of extensions: 62902
Number of successful extensions: 147
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)