Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_J12
         (865 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0208 - 23605701-23607149                                         32   0.51 
08_01_0074 + 530207-532603                                             30   2.1  
03_05_0123 + 21029599-21029862,21030269-21030691                       30   2.7  
12_02_0594 - 20883859-20884200,20884250-20884528,20884931-208851...    29   3.6  
09_04_0435 - 17545879-17546605,17546721-17546782,17547123-175473...    29   3.6  
12_02_0616 - 21246374-21246462,21246605-21247702,21247800-212481...    29   4.8  
11_03_0132 - 10505910-10505996,10507419-10507499,10509582-105105...    28   8.4  

>04_04_0208 - 23605701-23607149
          Length = 482

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 231 PPYLPVGTDVSAKYKGAFCEAKIKKVVRNIKCKVTLK-AGGGTITVNDDVI 380
           PPY  V    +AK     CE  + ++ RN  C VTL+  GGG   V+++ I
Sbjct: 310 PPYNTVSAFTNAK-NIVLCEGNLYQIWRNASCTVTLQLPGGGHRRVSENEI 359


>08_01_0074 + 530207-532603
          Length = 798

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -3

Query: 512 CDVTIIKYNSILTAILYFSN-DSFHCIFFRILFHFYSTSNPQCTFYYIIIHSNCSS 348
           C   ++ Y +++  +L     D  +C+F  +L    S   P C  Y  ++H  CSS
Sbjct: 202 CPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMS---PNCITYNCLLHGYCSS 254


>03_05_0123 + 21029599-21029862,21030269-21030691
          Length = 228

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 684 SRPVKADSAXREPHVGRVVPVKAAXG 761
           SR   AD   + PH  RVVPV+A  G
Sbjct: 114 SRQATADGHRQPPHAARVVPVRAGFG 139


>12_02_0594 -
           20883859-20884200,20884250-20884528,20884931-20885106,
           20885254-20885725
          Length = 422

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 366 NDDVIKGTLRIGSTVEVKQDPKKDAMEAVITKIQD-CSQYTVVFDDGD 506
           + D++K    +G+T    QD + D  E +  K+ D C Q+ +   D D
Sbjct: 310 DQDIVKAISYLGTTKRRLQDLRNDGWEGMFNKVIDFCIQHDIELPDMD 357


>09_04_0435 -
           17545879-17546605,17546721-17546782,17547123-17547335,
           17547506-17547590,17547904-17548061,17548174-17548294,
           17548765-17548927,17548973-17549097,17550800-17550888,
           17550970-17551636,17552671-17552717,17553506-17553862
          Length = 937

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -3

Query: 560 IEMPSTLQAKR*SPQCC--DVTIIKYNSILTAILYFSNDSFHC 438
           +EMP+  QA+  +       V +I YN +   IL F +D+F C
Sbjct: 97  LEMPAARQAEAAAAAAAVKGVCVISYNFLCMRILLFDSDTFKC 139


>12_02_0616 -
           21246374-21246462,21246605-21247702,21247800-21248110,
           21248550-21249251,21252802-21252912,21253396-21253481,
           21253753-21253862,21254085-21254236,21254656-21254765
          Length = 922

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 398 WKYCRSETGSEKRCNGSCH 454
           W  C SETG    C  SCH
Sbjct: 368 WLVCSSETGDRDCCESSCH 386


>11_03_0132 -
           10505910-10505996,10507419-10507499,10509582-10510528,
           10510645-10510742,10511273-10511442,10511551-10511832,
           10514544-10514936
          Length = 685

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +3

Query: 201 VLLIAMQGDDPPYLPVGTDVSAKYKGAFCEAKIKKVVRNIKCKVTLKAGGGTITVNDDVI 380
           VLL+ ++G +PPY       S+ Y  AFC+A++    R       L A      + D+  
Sbjct: 15  VLLLLVEGGEPPYSCGPRSPSSGY--AFCDARLPPARRAADLVSRLTAAEKVAQLGDEA- 71

Query: 381 KGTLRIG 401
            G  R+G
Sbjct: 72  GGVPRLG 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,004,159
Number of Sequences: 37544
Number of extensions: 395296
Number of successful extensions: 1014
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)