Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_J07
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...   163   2e-41
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual          30   0.48 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.84 
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    28   1.5  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   2.6  
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi...    27   4.5  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    27   4.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   5.9  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    26   5.9  
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    26   7.8  

>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score =  163 bits (397), Expect = 2e-41
 Identities = 79/120 (65%), Positives = 91/120 (75%)
 Frame = +2

Query: 359 NLDEIIAESDGIMVARGDLGIEIPPEKVFLAQKTMIARCNRVGKPVICATQMLESMVKKP 538
           N D I+  +DGIMVARGDLGIEIP  +VF+AQK MIA+CN  GKPV CATQMLESM   P
Sbjct: 256 NFDSILDVTDGIMVARGDLGIEIPASQVFVAQKMMIAKCNIAGKPVACATQMLESMTYNP 315

Query: 539 RPTRAEISDVANAILDGADCVMLSGETAKGDYPVECVHTMANICKEAEAVIWHRQLFNDL 718
           RPTRAE+SDV NA+LDGAD VMLSGET KG YPVE V  MA   + AEA I +  L+ ++
Sbjct: 316 RPTRAEVSDVGNAVLDGADLVMLSGETTKGSYPVEAVTYMAETARVAEASIPYGSLYQEM 375



 Score =  140 bits (338), Expect = 3e-34
 Identities = 68/120 (56%), Positives = 85/120 (70%), Gaps = 1/120 (0%)
 Frame = +1

Query: 7   KNITNVVKPGNRIFIDDGLISI-ICQSVSADTLTCTIENGGMLGSRKGVNLPGIPVDLPA 183
           KNIT V++PG  I++DDG++S  + + V    L   + N G + S+KGVNLP   VDLPA
Sbjct: 138 KNITKVIQPGRIIYVDDGILSFTVIEKVDDKNLKVRVNNNGKISSKKGVNLPKTDVDLPA 197

Query: 184 VSEKDKSDLLFGVEQGVDMIFASFIRNGAALHEIRGILGEKGKNIKIISKIENHQGNGQF 363
           +SEKDK+DL FGV+ GVDMIFASFIR    +  IR +LGE+GKNIKII KIEN QG   F
Sbjct: 198 LSEKDKADLRFGVKNGVDMIFASFIRRAEDVIHIREVLGEEGKNIKIICKIENQQGVNNF 257


>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 513 CWNPWLRSPVPPEPRSLTWPTPSSTELTA 599
           C NP  R   P + R++TW  PS TE T+
Sbjct: 259 CLNPACRFIHPTKSRNMTWRPPSKTEETS 287


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
 Frame = -2

Query: 687  TASASLQMLAMV*THS-TG*SPLAVSPESITQSAPSRMALA--TSEISALVGRGFLT--M 523
            TAS +    + V T S T  S  +++  S+T S+ S +A A  T   ++ V    +T  +
Sbjct: 1019 TASVTDSSTSSVATASATDSSTSSIAVASVTGSSTSSVATASATDSSTSSVATASITGSL 1078

Query: 522  DSSI*VAQITGFPTRLHLAI-MVFWARNTFSGGISIPRSPRATMIPSDSAIISSKLT 355
             SSI  A +TG PT    A+        T S  I+   S  A  + SD+A  SS +T
Sbjct: 1079 SSSIATASVTGSPTSSVTAVSSTSSVEGTASSTIAAAAS--AATLSSDAASGSSTVT 1133


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 167 PWTYPQSPRRTSRTCSSASNKAL 235
           P T P SPRR+ +  S A NKAL
Sbjct: 7   PSTAPSSPRRSIQRISDAKNKAL 29


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 114 NGTRKSVSADRLTDDRDEAIIDEDSVSWLHDIR 16
           N TRKS+S  + TD      + +D  SWL  +R
Sbjct: 576 NKTRKSISHSKNTDKHVGNELPQDIPSWLRSLR 608


>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
           Dma1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -1

Query: 634 IVALGSLPGEHHAVSSVEDGVGHVRDLGSGGTGLLNH-GFQHLSRTDHWFSNPIASGDHG 458
           IV    +    HA    E+   +++D+GS     LNH      S+T   +  PI++ D  
Sbjct: 77  IVFRSKVVSRRHAQIFYENNTWYIQDMGSSSGTFLNHVRLSPPSKTSKPY--PISNNDIL 134

Query: 457 LLGEEY 440
            LG +Y
Sbjct: 135 QLGADY 140


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 199 KSDLLFGVEQGVDMIFASFIRNGAALHEIRGIL 297
           K +LLFGV+ G D+IF   +       EIR  L
Sbjct: 341 KYELLFGVQSGGDLIFVPTVSLTIIQSEIRNRL 373


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = -3

Query: 305  FSPRMPRISCSAAPLRMNDAKIISTPCSTPKSRSDLSFSETAGRSTGMPGRLTP 144
            FSPRM  ++ S +PL MN A   S       S     F+  A      P  L P
Sbjct: 1588 FSPRMGPVNNSGSPLAMNAAGQPSLAVPAVPSAPSNHFNPFAKMQPPAPSPLQP 1641


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 117 KRRYARIPERRQPARHTRGPTRSLREGQV 203
           + RY  IPE R+ ARH   PT   +  ++
Sbjct: 369 RERYKHIPEIRRIARHRHLPTNVKKAAEI 397


>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 149 STCPAYPWTYPQSPRRTSRTCS 214
           S  P  PW YP SP   +RT S
Sbjct: 29  SVNPITPWGYPASPISIARTTS 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,265,412
Number of Sequences: 5004
Number of extensions: 68892
Number of successful extensions: 246
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)