Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_J07
         (853 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.6  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   4.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.2  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   8.2  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 524 WIPAFESHRSLVFQPD 477
           WIPAF  HR     P+
Sbjct: 397 WIPAFAIHRDSAIYPN 412


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 196 DKSDLLFGVEQGVDMIFASFIRNGAALHEIRGIL 297
           D  D L+GV+ GVD I    + N   +H+ R I+
Sbjct: 118 DACDRLWGVDTGVDDI----LGNNTVIHQPRIII 147


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +2

Query: 110 PLKTEVCS-DPGKASTCPAYPWTY 178
           PL +E      G AS C A+PW +
Sbjct: 276 PLSSEATDLRMGVASFCKAFPWHF 299


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +2

Query: 539 RPTRAEISDVANAILDGADCVMLSGETAKGDYPVECVHTMANICKEAEAVIWHR 700
           +PT     ++   I++  D VML   T +G  P+     + NI  +   +  HR
Sbjct: 139 KPTTTS-DELKRGIINPED-VMLKRRTGEGSKPIFEREEIKNILNKTNEITEHR 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,898
Number of Sequences: 438
Number of extensions: 5391
Number of successful extensions: 38
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)