Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_J04
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    27   3.3  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    27   3.3  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    26   7.6  

>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 266 EVAQARAAHISALQQASKNNPNPNDDGSY 352
           EVA+ R   ++   +  KN P+P DD SY
Sbjct: 466 EVAEQRQLIVNHELEQEKNAPSPTDDKSY 494


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 258 THPKSHRLVPHTFPLFSRLRKITPTQMTT-DHTTLDGTMKST 380
           +HPK  RL+P  FP  S+ ++I+  ++   +  +LD  ++ T
Sbjct: 527 SHPKGMRLLPRLFPHLSKEQQISILKVVVYNFDSLDIVLRGT 568


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 664 PGLERSRSQDWNAPAHQSWNGAPSXQSGAPLTXPXXXDXPTMXP 795
           P +E+ R ++ NA    SWN      S  PL+ P   + P + P
Sbjct: 81  PSVEKPRGRNMNAFEETSWNRFRKNGSLFPLSSPPISE-PDLRP 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,221
Number of Sequences: 5004
Number of extensions: 43178
Number of successful extensions: 140
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)