Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_J04
(839 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0491 + 18043087-18043548 31 0.86
08_01_0701 + 6200351-6200470,6200879-6201104,6201502-6201747,620... 29 3.5
06_01_0524 - 3794723-3795238,3796209-3796378,3797129-3797615 29 3.5
02_05_0075 - 25610386-25610508,25610529-25610583,25610801-256112... 29 4.6
01_06_0193 - 27359575-27361962 29 4.6
04_04_0347 + 24564589-24565296 29 6.1
08_01_0100 - 714244-715461 28 8.1
07_03_1336 - 25868238-25868284,25868731-25869079 28 8.1
02_05_0686 - 30900748-30902167,30903442-30904742 28 8.1
02_03_0172 + 15965342-15965711,15967757-15967849,15967976-159680... 28 8.1
>09_04_0491 + 18043087-18043548
Length = 153
Score = 31.5 bits (68), Expect = 0.86
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +2
Query: 182 CGAHASGWAGPPANIALSQDGRNILDTPEVAQARAAHISALQQASKNNPNPNDDGSYD 355
C ++ SGW A+ S D R I+ + + + ++ +N + NDDG YD
Sbjct: 14 CNSNESGWTMYLASPTHSDDVRAIVSEGSNVEDGSGFSNERRRGKENKGHANDDGDYD 71
>08_01_0701 +
6200351-6200470,6200879-6201104,6201502-6201747,
6201818-6201868,6202231-6202491,6202587-6202639,
6202705-6202819,6202985-6203239,6203773-6204827
Length = 793
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 88 TIFIFLSLFHFCASFHYENEIHDRSSL 168
T FI + ++HFC YE E+H + S+
Sbjct: 507 TCFIIMYVWHFCTVKRYEFEMHSKVSM 533
>06_01_0524 - 3794723-3795238,3796209-3796378,3797129-3797615
Length = 390
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 203 WAGPPANIALSQDGRNILDTPEVAQARAAHISALQQ 310
W+ P+++ S+DGR + E++ A +AHI + +
Sbjct: 289 WSEIPSDVESSRDGRRYISGEELSDADSAHIVVMDK 324
>02_05_0075 -
25610386-25610508,25610529-25610583,25610801-25611240,
25612951-25613619,25614551-25615870
Length = 868
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = +1
Query: 4 IQTQVAPRHSDSWKSLVF---QQRYQPTKTNTIFIFLSLFHFCASFHYENEIHDRSSL 168
+ Q A + +++ SLV Q ++ + I + +LF+ AS+HY E+H+++ +
Sbjct: 660 VAKQAALYYEEAYASLVIPPLQNHFERSWVAHILLKAALFNAEASYHYAIELHEKTEI 717
>01_06_0193 - 27359575-27361962
Length = 795
Score = 29.1 bits (62), Expect = 4.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 637 SPGLECPRPPGLERSRSQDWN 699
SPGL C PPG E + ++W+
Sbjct: 297 SPGLRCTCPPGYEMTDPENWS 317
>04_04_0347 + 24564589-24565296
Length = 235
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 653 APAHQDWNAPAHRTGMLPLTNHGT 724
AP H W PAH P HGT
Sbjct: 126 APVHSSWPWPAHAPAPAPAVIHGT 149
>08_01_0100 - 714244-715461
Length = 405
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +3
Query: 201 VGPAHPPTLLCLKMDAIFWTHPKSHRLVPHTFPLFSRLRKITPTQMT-TDHTTLDG 365
VGPAH +D + WT P+ V F LF R + P + DH G
Sbjct: 313 VGPAHRLPFFDGTLDIVHWTSPEHVAGVMLEFALFDIYRVLRPGGLLWLDHFVFPG 368
>07_03_1336 - 25868238-25868284,25868731-25869079
Length = 131
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +2
Query: 152 MIVVACLALACGAHASGWAGPPANIALSQDGRNI 253
++VVA LALACGA + A PA S G +I
Sbjct: 8 VVVVAVLALACGAASQSPAPAPAAGPASDCGSSI 41
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/72 (30%), Positives = 23/72 (31%), Gaps = 1/72 (1%)
Frame = +1
Query: 613 PTTMERPSSPGLECPRPPGLER-SRSQDWNAPAHQSWNGAPSXQSGAPLTXPXXXDXPTM 789
P RP+SP P PPG E SR Q A A S P P P
Sbjct: 275 PAPAARPASPSPSLPLPPGRESPSRPQSIAAAAVASPAPPPPPPPKPAAAAPPPPPPPKA 334
Query: 790 XPAXXTXLRSPP 825
P PP
Sbjct: 335 APPPPPPKGPPP 346
>02_03_0172 +
15965342-15965711,15967757-15967849,15967976-15968060,
15968749-15968824,15968992-15969120,15969473-15969571,
15969661-15969762,15970257-15970415,15970507-15970602,
15971497-15971647,15971782-15971893,15972004-15972074,
15972548-15972984,15973421-15973492,15973713-15973810,
15974350-15974425,15975512-15975634,15975776-15975844
Length = 805
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 622 MERPSSPGLECPRPPGLERSRSQDWNAPAHQSWNGAPSXQSGAP 753
+ RPS+P P P G R Q WNA ++G P G P
Sbjct: 79 LPRPSAPPPPPPPPRGRRRVTRQFWNA---GDYDGKPDLLGGDP 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,641,530
Number of Sequences: 37544
Number of extensions: 335684
Number of successful extensions: 1196
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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